retrieve protein sequence and do a BLAST with options from DDBJ Web services

Created: 2010-07-21 13:24:56 Last updated: 2010-09-01 17:37:48

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informations on Web services available at http://xml.nig.ac.jp/index.html

exxample

accession : Q9NRA8
database : UNIPROT
program : blastp
param : -b 5 -m 7

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Workflow Components

Inputs (4)

Name	Description
bioinformatics_programs
sequence_database
bioinformatics_parameter
UniProt_accession

Processors (2)

Name	Type	Description
getFASTA_UNIPROTEntry	arbitrarywsdl	Get UNIPROT entry of FASTA Format by Accession Number
searchParam	arbitrarywsdl	Execute Blast with parameter

Beanshells (0)

Outputs (1)

Name	Description
blast_report_ddbj

Links (6)

Source	Sink
getFASTA_UNIPROTEntry:Result	searchParam:query
bioinformatics_programs	searchParam:program
sequence_database	searchParam:database
bioinformatics_parameter	searchParam:param
UniProt_accession	getFASTA_UNIPROTEntry:accession
searchParam:Result	blast_report_ddbj

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Taverna 1

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Lebreton

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Lebreton

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Information Statistics

1846 viewings

1718 downloads

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retrieve protein sequence and do a BLAST with options from DDBJ Web services

Created by Lebreton on Wednesday 21 July 2010 13:24:55 (UTC)

Last edited by Lebreton on Wednesday 01 September 2010 17:37:48 (UTC)

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Taverna 1

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Lebreton

retrieve protein sequence and do a BLAST a... (1)

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retrieve protein sequence and do a BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: Lebreton

Attributions: BLAST using DDBJ service

Taverna 1

Uploader

Lebreton

retrieve nucleotide sequence and do a BLAS... (1)

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retrieve nucleotide sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Attributions: retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services