retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services

Created: 2010-07-21 13:16:00 Last updated: 2010-07-21 13:23:12

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retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services

informations on Web services available at http://xml.nig.ac.jp/index.html

example
accession : Q9NRA8
database : ddbjbct
program : tblastn
param : -b 100 -v 100

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Workflow Components

Inputs (4)

Name	Description
bioinformatics_program
sequence_database
bioinformatics_parameter
UniProt_accession

Processors (3)

Name	Type	Description
getFASTA_UNIPROTEntry	arbitrarywsdl	Get UNIPROT entry of FASTA Format by Accession Number
searchParallel	arbitrarywsdl	Auto generated from http://xml.nig.ac.jp/wsdl/Blast.wsdl
extractPosition	arbitrarywsdl	get position information from BLAST

Beanshells (0)

Outputs (1)

Name	Description
position_blast_report_ddbj

Links (7)

Source	Sink
getFASTA_UNIPROTEntry:Result	searchParallel:arg2
bioinformatics_program	searchParallel:arg0
sequence_database	searchParallel:arg1
bioinformatics_parameter	searchParallel:arg3
UniProt_accession	getFASTA_UNIPROTEntry:accession
searchParallel:Result	extractPosition:result
extractPosition:Result	position_blast_report_ddbj

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Taverna 1

Information Uploader

Lebreton

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Lebreton

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retrieve protein sequence and do a high speed BLAST from DDBJ Web services

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Information Statistics

2099 viewings

1790 downloads

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retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services

Created by Lebreton on Wednesday 21 July 2010 13:16:00 (UTC)

Last edited by Lebreton on Wednesday 21 July 2010 13:23:12 (UTC)

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Taverna 1

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Lebreton

retrieve protein sequence and do a BLAST a... (1)

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retrieve protein sequence and do a BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: Lebreton

Attributions: BLAST using DDBJ service

Taverna 1

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retrieve nucleotide sequence and do a BLAS... (1)

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retrieve nucleotide sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Attributions: retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services