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Perfrom a text based search through PubMed

Created: 2010-07-05 13:03:35      Last updated: 2010-07-05 13:03:37

This workflow takes in a number of search terms in which to perform a search over the PubMed literature database. These search terms may be input as if entered in the web based version of PubMed. The output from this workflow is a list of PubMed identifiers in xml based format

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Information Workflow Type

Taverna 2

Information Uploader

4399?size=60x60 Gb Paul Fisher

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Information Statistics

1820 viewings

1578 downloads

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Version History

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  1. Perfrom a text based search through PubMed

    Created by Paul Fisher on Monday 05 July 2010 13:03:35 (UTC)



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Taverna 2
Uploader
4399?size=60x60 Gb Paul Fisher

Workflow Gene to Pubmed (3)

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This workflow takes in a list of gene names and searches the PubMed database for corresponding articles. Any matches to the genes are then retrieved (abstracts only). These abstracts are then returned to the user.

Created: 2010-07-05 | Last updated: 2011-01-26

Credits: User Paul Fisher

Taverna 2
Uploader
Avatar Yoshinobu Kano

Workflow A template example workflow using U-Compar... (2)

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An example workflow using the U-Compare text mining system inside embedded. Users can easily make their own workflow with U-Compare reusing this workflow. This workflow retrieves abstract texts from Pubmed with user specified query, inputs the texts to U-Compare, interprets the output of U-Compare. You have to download and store the UIMA CPE XML descriptor file (StdinPPIExtraction-CPE-EventMine.xml) to run the default setting, which runs a event extraction text mining workflow by U-Compare. S...

Created: 2010-07-05 | Last updated: 2010-09-02

Credits: User Yoshinobu Kano

Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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