A template example workflow using U-Compare text mining system inside
An example workflow using the U-Compare text mining system inside embedded. Users can easily make their own workflow with U-Compare reusing this workflow. This workflow retrieves abstract texts from Pubmed with user specified query, inputs the texts to U-Compare, interprets the output of U-Compare. You have to download and store the UIMA CPE XML descriptor file (StdinPPIExtraction-CPE-EventMine.xml) to run the default setting, which runs a event extraction text mining workflow by U-Compare. See our publication, Kano, et al., 2010, "Text Mining Meets Workflow: Linking U-Compare with Taverna " http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btq464 for details.
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http://www.myexperiment.org/workflows/1377/download?version=2
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