User: Peter Cock

Name: Peter Cock

Joined: Wednesday 08 April 2015 14:40:02 (UTC)

Email (public): Not specified

Website: http://blastedbio.blogspot.co.uk/

Location: Dundee, United Kingdom

0 Friends

0 Groups (admin)

0 Groups (member)

1 Workflows

0 Favourites

Peter Cock has been credited 1 time

Peter Cock has an average rating of:

0.0 / 5

(0 ratings in total)

for their items

Description/summary not set

Other contact details:

Twitter: @pjacock

Interests:

Not specified

Field/Industry: Bioinformatics

Occupation/Role(s): Not specified

Organisation(s):

Not specified

Note: some items may not be visible to you, due to viewing permissions.

Contents (click to expand/contract)

Galaxy

Uploader

Peter Cock

Species of top BLAST hits (1)

Download

Galaxy workflow for counting species of top BLAST hits.This is an example workflow using the Galaxy wrappers for NCBI BLAST+, see https://github.com/peterjc/galaxy_blast and http://dx.doi.org/10.1101/014043This Galaxy workflow (file blast_top_hit_species.ga) is intended for an initial assessment of a transcriptome assembly to give a crude indication of any major contamination present based on the species of the top BLAST hit of 1000 representative sequences.Development of this workflow is und...

Created: 2015-04-08 | Last updated: 2015-04-08

Credits: Peter Cock

What is this?

Linked Data

Non-Information Resource URI:

Alternative Formats