User: Peter Cock

Name: Peter Cock

Joined: Wednesday 08 April 2015 14:40:02 (UTC)

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Website: http://blastedbio.blogspot.co.uk/

Location: Dundee, United Kingdom

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Twitter: @pjacock

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Peter Cock

Species of top BLAST hits (1)

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Galaxy workflow for counting species of top BLAST hits.This is an example workflow using the Galaxy wrappers for NCBI BLAST+, see https://github.com/peterjc/galaxy_blast and http://dx.doi.org/10.1101/014043This Galaxy workflow (file blast_top_hit_species.ga) is intended for an initial assessment of a transcriptome assembly to give a crude indication of any major contamination present based on the species of the top BLAST hit of 1000 representative sequences.Development of this workflow is und...

Created: 2015-04-08 | Last updated: 2015-04-08

Credits: Peter Cock

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