User: Yassene

Name: Yassene

Joined: Tuesday 14 June 2011 16:42:50 (UTC)

Last seen: Wednesday 02 December 2015 15:14:05 (UTC)

Email (public): Not specified

Website: Not specified

Location: Not specified

8 Friends

1 Group (admin)

2 Groups (member)

1 Files

1 Packs

9 Workflows

0 Favourites

Yassene has been credited 13 times

Yassene has an average rating of:

5.0 / 5

(1 rating in total)

for their items

Description/summary not set

Other contact details:

Not specified

Interests:

Not specified

Field/Industry: Not specified

Occupation/Role(s): Not specified

Organisation(s):

Not specified

Note: some items may not be visible to you, due to viewing permissions.

Contents (click to expand/contract)

Taverna 2

Uploader

Yassene

single_double_flattten (1)

Download

No description

Created: 2015-11-17 | Last updated: 2015-12-02

Taverna 2

Uploader

Yassene

getDatabaseLinks (1)

Download

No description

Created: 2015-11-16 | Last updated: 2015-12-02

Taverna 2

Uploader

Yassene

searchPublications (1)

Download

No description

Created: 2015-11-16 | Last updated: 2015-12-02

Taverna 2

Uploader

Yassene

searchPublications (1)

Download

No description

Created: 2015-11-16 | Last updated: 2015-12-02

Taverna 2

Uploader

Yassene

getDatabaseLinks (1)

Download

No description

Created: 2015-11-16 | Last updated: 2015-12-02

Taverna 2

Uploader

Yassene

Generate Spectral Library (1)

Download

This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 Unported License (CC BY-SA). Copyright© 2012 Yassene Mohammed Please send your feedback, questions, comments and suggestions for improvement to y.mohammed@lumc.nl 14 November 2012 Yassene

Created: 2013-08-16

Credits: Yassene Magnus Palmblad

Taverna 2

Uploader

Yassene

Cloud Parallel Processing of Tandem Mass S... (1)

An advanced scientific workflow for searching LC−MS data using SpectraST on the cloud. Uploading the libraries is optimized to achieve better performance, which makes this workflow more suitable for processing mzXML spectra files from human samples, as the corresponding NIST library needed by SpectraST is larger than 2 GB. Here we connect 3 nested workflows, in which the first 2, i.e., decomposeMzxml and uploadToCloud, run in parallel, while the third nested workflow, i.e. runSpectrastO...

Created: 2012-09-10 | Last updated: 2015-08-19

Credits: Yassene

Taverna 2

Uploader

Yassene

Cloud Parallel Processing of Tandem Mass S... (1)

Download

A workflow for searching LC−MS/MS data using SpectraST on the cloud. The processor mzxmlDecomposer, pepxmlUnzip, and pepxmlComposer are identical to the one in the X!Tandem workflow (Figure 2). The only difference is that the Xtandem processor is exchanged with the Spectrast processor and the constant inputs are adjusted to SpectraST. This approach is also possible for other search engines as described in Data Decomposition and Recomposition Algorithms. More details can be found here:...

Created: 2012-09-10

Credits: Yassene

Taverna 2

Uploader

Yassene

Cloud Parallel Processing of Tandem Mass S... (1)

Download

A workflow for searching LC−MS/MS mass spectrometry data using X!Tandem on the cloud. The workflow consists of 5 processors. The objectLogic processor prepares all inputs in the right format, i.e. keeping or converting strings into file object according to the following processor. The mzxmlDecomposer and pepxmlComposer run the decomposing/recomposing algorithms. objectLogic, mzxmlDecomposer and pepxmlComposer are Beanshell processors and they run locally. Xtandem runs X!Tandem on a remo...

Created: 2012-09-10

Credits: Yassene

What is this?

Linked Data

Non-Information Resource URI:

Alternative Formats