De User: Steffen Möller


Name: Steffen Möller

Joined: Wednesday 06 August 2008 22:08:55 (UTC)

Last seen: Wednesday 18 May 2011 09:12:21 (UTC)

Email (public): Not specified


Location: Lübeck, Germany

Steffen Möller has been credited 13 times

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Workflow Example for external tools with gzip and g... (1)

This workflow is self-contained. It has a fixed URL from which a text file is downloaded (output as Original_file). That file is gzipped (output as Compressed_File) and then gunzipped again (output as Decompressed_File). The workflow wraps external tools from and needs a beta version of Taverna 2.3 or later.

Created: 2011-05-18 | Last updated: 2011-05-18

Credits: User Steffen Möller User Alan Williams

Workflow External Tool: Numerically adding two valu... (1)

The workflow is an examples for the External Tools / UseCase plugin to integrate external tools. It wraps the "bc" command line calculator. Internally, it executes the following script: if [ ! -r "$1" ]; then echo "Cannot read file indicated by first argument '$1'." ; exit -1 ; fi ; if [ ! -r "$2" ];then echo "Cannot read file indicated by second argument '$1'." ; exit -1 ; fi if [ -x /usr/bin/bc ]; then ...

Created: 2011-05-06 | Last updated: 2011-05-06

Credits: User Steffen Möller

Workflow Retrieve details on genetic marker by UniS... (3)

The workflow retrieves the marker's primers and the organism name - if available. The organism name may not be unique for a given marker. The primers should be. It would be nice if some good soul could investigate how to retrieve the various mappings from the site. The retrieval of the primers is thought to prepare for a manual mapping of the marker's chromosomal location.

Created: 2009-08-19

Credits: User Steffen Möller

Workflow Split text/string into its lines and filte... (2)

When retrieving a URL or soemthing alike, one can often identify the region of interest as a single line. Besides the expected output, also some interim values, like the lines split are forwarded, to allow some straight-forward cascading of filters with reduced redundancy.

Created: 2009-08-19

Credits: User Steffen Möller

Workflow dbfetch tutorial (1)

This workflow eases entry in the world of Taverna with one of the key tasks - the retrieval of plain data. The dbfetch offers sequence and structure data from a large variety of sources. A first execution of this workflow informs about these in the "getSupportedDBs" output. Also the formats and styles are listed. The two inputs allow for the specification of a query that leaves the format with "default" (which is different for every database, "native" would be a better fit), the style is alw...

Created: 2008-09-22

Credits: User Steffen Möller

Workflow echo (1)

The workflow tests the standard-compliance of web service descriptions of ARC-1, a development of the EU project "KnowARC" to modernise the grid infrastructure ARC of the NorduGrid. Learn more about it on and If you have computers in spare - join us - and help you very own and many other sciences. And you make many interesting contacts just en passent. No authorisation is required for this very experimental service.

Created: 2008-09-18

Credits: User Steffen Möller

Workflow Structural alignment of arbitrary number o... (1)

This grid-executed Mustang application performs a structural alignment of protein sequences. The number of arguments is variable, in principle, but is shown here for three. The application is executed via the Taverna-ARC plugin on a machine of the NorduGrid. Although your machine can be a part of it, you may prefer to wait for a later version of that interface that does not require grid certificates.

Created: 2008-09-02

Credits: User Steffen Möller User Fxtentacle

Attributions: Workflow Fetch PDB flatfile from RCSB server

Workflow Retrieve Single Molecule from ZINC - struc... (1)

The ZINC database (http;// is a collection of substances with known structures and some chemical characterisation that are commercially available. It is freely available and a much respected resource for computational screening for functional compounds. With the ZINC ID at hand, the ZINC web site is contacted and from there the URL parsed the refence to the real data. This workflow does not scale for regular docking applications. One would retrieve a collection of data inst...

Created: 2008-08-24 | Last updated: 2008-08-25

Credits: User Steffen Möller

Workflow mustang provides structural alignment of t... (3)

This workflow experiments with the partial execution of jobs on a computational grid. The workflow elements "mustang" and "boxshade" are executed on grid nodes. Access to these resources is orchestrated with the plugin available on Please contact the author of this workflow for access permissions.

Created: 2008-08-20 | Last updated: 2008-08-25

Credits: User Steffen Möller

Attributions: Workflow Fetch PDB flatfile from RCSB server

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