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Rserve on Bio-Linux
Created: 2014-02-13 14:55:21
Credits:
Tim Booth
License: Creative Commons Attribution-Share Alike 3.0 Unported License
The recommended way to run Rserve on Bio-Linux is to install the "r-cran-rserve" package - ie:$ sudo apt-get install r-cran-rserve(Note - this wasn't working on the morning of the 13th but has now been fixed in version 1.7-3-0biolinux2)If you install the library by using install.packages("Rserve") it will work but it will not get updated and will mask the system version of Rserve, which could cause you hard-to-diagnose problems down the line. My recommendation is...
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Workflow
file_fetching_workflow
(1)
This workflow demonstrates interaction with an instance of an omixed server (omixed.org) hosting a very simple model and containing some sequence files. The server is available for public access so you should be able to try this out.
Notes:
With the versions of Taverna and Axis2 I am using, I had to massage the WSDL emitted by Axis2 in order to keep Taverna happy. This involved removing the sections relating to SOAP12.
The workflow first connects to the server and obtains a ses...
Created: 2008-07-14
| Last updated: 2008-07-14
Credits:
Tim Booth