User: Magnus Palmblad

Name: Magnus Palmblad

Joined: Wednesday 25 April 2012 11:51:29 (UTC)

Last seen: Wednesday 30 January 2019 10:30:32 (UTC)

Email (public): n.m.palmblad [at] lumc.nl

Website: http://www.ms-utils.org

Location: Leiden, Netherlands

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2 Groups (member)

6 Files

34 Workflows

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Magnus Palmblad has been credited 44 times

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Description/summary not set

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Associate Professor at the Center for Proteomics and Metabolomics at the Leiden University Medical Center

Interests:

Mass spectrometry, proteomics, bioinformatics, algorithms, large-scale biology, evolution

Field/Industry: Biomedical

Occupation/Role(s): Principal Investigator

Organisation(s):

American Society for Mass Spectrometry

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Workflow

Taverna 2

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Robert Winkler

Trans-proteomic-pipeline like ('TTPish') w... (2)

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Created: 2015-12-10 | Last updated: 2016-09-29

Credits: Robert Winkler

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Workflow

Taverna 2

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Magnus Palmblad

Online PubMed author search and geographic... (2)

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This workflow retrieves bibliographic data for a single author using the PMC Europe RESTful Web service and visualizes the geographic distribution of this author's and their co-authors' geographic distribution using the rworldmap package. This is version 2.0 of this workflow, incorporating changes to the Web service allowing up to 1,000 records to be retrieved at once, using the pageSize parameter.

Created: 2015-08-19 | Last updated: 2015-09-07

Credits: Magnus Palmblad Arzu Tugce Guler

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Taverna 2

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Yassene

Cloud Parallel Processing of Tandem Mass S... (1)

An advanced scientific workflow for searching LC−MS data using SpectraST on the cloud. Uploading the libraries is optimized to achieve better performance, which makes this workflow more suitable for processing mzXML spectra files from human samples, as the corresponding NIST library needed by SpectraST is larger than 2 GB. Here we connect 3 nested workflows, in which the first 2, i.e., decomposeMzxml and uploadToCloud, run in parallel, while the third nested workflow, i.e. runSpectrastO...