User: Mutanthumb

Name: Mutanthumb

Joined: Wednesday 07 September 2011 20:03:41 (UTC)

Last seen: Thursday 06 October 2011 03:18:22 (UTC)

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8 Files

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12 Workflows

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Mutanthumb

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modified_gbk.xml

Created: 2011-10-06 04:15:08 | Last updated: 2011-10-06 04:15:09

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is "clipped" down version of the output from the Read_GenBank_File service.

File type: XML

Comments: 0 | Viewed: 24 times | Downloaded: 613 times

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Mutanthumb

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INSD.mod.dtd

Created: 2011-10-06 03:49:45 | Last updated: 2011-10-06 04:06:07

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file is required for converting the GenBank gbk file into an XML. This file needs to be save to Taverna folder: (Default location on Mac): /Applications/Taverna 2.3.0.app/Contents/Resources/Java

File type: Trident (Package)

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agave.dtd

Created: 2011-10-06 03:48:27 | Last updated: 2011-10-06 04:05:28

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file is required for converting the GenBank gbk file into an XML. This file needs to be save to Taverna folder: (Default location on Mac): /Applications/Taverna 2.3.0.app/Contents/Resources/Java

File type: Trident (Package)

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TestGzippedGbk4

Created: 2011-10-06 03:21:52 | Last updated: 2011-10-06 04:00:24

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a test file to be used on my workflow. gbk.gz

File type: application/x-gzip

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NCBI_Entity.mod.dtd

Created: 2011-10-06 03:51:57

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file is called by my version of the agave.dtd file, needs to be saved locally in the Taverna folder: Default location a Mac: /Applications/Taverna 2.3.0.app/Contents/Resources/Java

File type: Trident (Package)

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TestGzippedGbk3

Created: 2011-10-06 03:23:14

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: application/x-gzip

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TestGzippedGbk2

Created: 2011-10-06 03:22:37

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: application/x-gzip

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TestGzippedGbk1

Created: 2011-10-06 01:23:35

Credits: Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File used for testing my workflow.

File type: application/x-gzip

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Workflow

Kepler

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Scottsc...

Concatenated String of Hipsterisms (1)

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A workflow that gets a number of http://hipsteripsum.me/ through a REST call to http://hipsterjesus.com/ into a JSON string, then disassembles the record and concatenates into a paragraph.

Created: 2013-09-13

Credits: Scottschreckengaust tpacurtis Mutanthumb Chrisser Kayleigh Ayn BohÃ©mier Atminer

Attributions: Concatenated String of Sentences Hello Hipster Hello Hipster Hello Hipster World

Workflow

Kepler

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Mutanthumb

Kepler Comic (1)

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This Kepler workflow displays an image when a URL is supplied. Based on DisplayImage by Matt Jones

Created: 2011-09-28 | Last updated: 2011-09-28

Credits: Mutanthumb

Workflow

Kepler

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Mutanthumb

Absolute Value (1)

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This Kepler workflow does this basic calculation: 3 + 5 */ 3 + - 5 then take the absolute value of the whole mess Based on BasicAddition by Matt Jones

Created: 2011-09-28 | Last updated: 2011-09-28

Credits: Mutanthumb

Workflow

Kepler

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Mutanthumb

Hello Hipster (1)

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This is a Kepler workflow which modifies the usual Hello World to show LoremHipster text instead. Based on "Hello World" by Matt Jones

Created: 2011-09-28 | Last updated: 2011-09-28

Credits: Mutanthumb

Workflow

Taverna 2

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Mutanthumb

Nested Mean Rshell (1)

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This workflow uses a nested workflow. The nested workflow takes a list of values and finds the mean and standard deviation for each list. The result of the nested workflow is then concatenated with a list of names using Dot Product for list handling.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Mutanthumb

Workflow

Taverna 2

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Mutanthumb

ZipCodeGetWeatherInfo (1)

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Gives the 7 day weather forecast by Zip Code Info display: wind, visibility, temperature, sky conditions and pressure. Based on "Get Weather Info" by Franck Tanoh

Created: 2011-09-13 | Last updated: 2011-09-13

Credits: Mutanthumb

Workflow

Taverna 2

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Mutanthumb

Get My Weather (1)

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Gets a variety weather info for "Cleveland" and "Indianapolis" Based on "Get weather information" by Franck Tanoh

Created: 2011-09-13 | Last updated: 2011-09-13

Credits: Mutanthumb

Workflow

Taverna 2

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Mutanthumb

Failed 2 Chart Attempt (1)

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Tried to show 2 charts simulatneously.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Mutanthumb Alan Williams

Workflow

Taverna 2

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Mutanthumb

New Population Histogram (1)

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This workflow fetches the details of the countries in the world and then uses R to produce a histogram of the log of their population Based on Population histogram in R by Alan R Williams

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Mutanthumb

Workflow

Taverna 2

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Mutanthumb

Mean Rshell (1)

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Used the Rshell to find the MEAN and standard deviation of a list of values.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Mutanthumb

Workflow

Taverna 2

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Mutanthumb

Get Element ID from Gzipped GenBank file (1)

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This workflow gunzips a *.gbk.gz file, converts it to XML (via agavewriter) and finds the Element ID. Does not work on *.gz files larger than 10MB. I upped the JVM settings on Taverna to: <key>VMOptions</key> <string>-Xmx4096m -XX:MaxPermSize=1024m</string> Created my own agave.dtd to get the XPath service to work the XML file generated from the Read_GenBank_File service. You will need to ...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Mutanthumb Alan Williams

Workflow

Taverna 2

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Mutanthumb

Ag Spreadsheet Import (1)

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Based on Spreadsheet Import Example by David WithersSusan Example using the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports the file spreadsheet file WaterUse.xlsx and generates a graph from the date. The source data is from http://data.gov.uk/

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Mutanthumb Alan Williams

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