myExperiment - Workflows

Taverna 2

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Francois Belleau

What is Paget's disease sparql query example (3)

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SELECT distinct ?s1 FROM <http://atlas.bio2rdf.org/sparql> WHERE { ?s1 ?p1 ?o1 . ?o1 bif:contains "paget" . FILTER( regex(?s1, "omim") OR regex(?s1, "geneid") OR regex(?s1, "uniprot")) } followed by SELECT ?type1, count(*) FROM <http://localhost:8890/sparql> WHERE { ?s1 ?p1 ?o1 . ?o1 bif:contains "paget" . ?s1

Created: 2009-01-20

Credits: Francois Belleau

Taverna 2

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Francois Belleau

What is known about HIV using Bio2RDF's SP... (2)

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To answer this question Bio2RDF Atlas about mouse and human genome sparql endpoint available at http://atlas.bio2rdf.org/sparql is searched. The selected URIs are then loaded into your local Virtuoso triplestore at http://localhost:8890/sparql. You must enable insert mode into the graph. Once the mashup is built, two SPARQL queries analyze the obtained graph. Finally you can submit queries to the RDF mashup about HIV as you like. Enjoy. This is the queries present in t...

Created: 2009-02-05 | Last updated: 2009-02-05

Credits: Francois Belleau

Taverna 2

Uploader

Francois Belleau

Triplify search results from all KEGG data... (3)

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Search all KEGG databases using bfind SOAP service and merge results into a bmuri list and a ntriples string.

Created: 2009-11-30 | Last updated: 2009-11-30

Credits: Francois Belleau

Taverna 2

Uploader

Francois Belleau

What is [query] from NCBI, EBI, UniProt an... (2)

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test values: query = paget disease query = pdb4 query = hk1 query = h1n1 This rdfiser query those four federated search services EB-Eye, KEGG LinkDB, NCBI Entrez and UniProt knowledgebase. RDF triples are returned for search statistics with Bio2RDF normalised URIs. This workflow should be used responsibly because it can generate high load at the provider resources. test values: query = paget disease query = pdb4 query = hk1 query = h1n1 query = paget disease query = pdb4 query = hk1 que...

Created: 2009-11-03 | Last updated: 2009-11-03

Credits: Francois Belleau

Taverna 2

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Francois Belleau

Sesame triplestore loader from a dereferen... (2)

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Load triples obtained from an URL in N3 or XML format and load them into your local Sesame Triplestore locally installed and available at http://localhost/sesame. The http://localhost/sesame/servlets/uploadURL service of Sesame is used in HTTP POST mode.

Created: 2009-02-19 | Last updated: 2009-02-19

Credits: Francois Belleau

Taverna 2

Uploader

Francois Belleau

Author's collaborators according to pubmed (1)

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SELECT distinct ?s2 FROM <http://atlas.bio2rdf.org/sparql> WHERE { ?s1 ?p1 ?o1 . ?o1 bif:contains "author" . ?s2 ?p2 ?s1 . FILTER( regex(?s1, "pubmed") ) } followed by SELECT ?creator, count() FROM <http://localhost:8890/sparql> WHERE { ?s1 ?p1 . ?s1 ?p2 ?o2 . FILTER( regex(?o2, "author")) ?s1 ?creator . } ORDER BY DESC(count())

Created: 2009-01-20 | Last updated: 2009-01-20

Credits: Francois Belleau

Taverna 2

Uploader

Francois Belleau

Text search within sparql point (1)

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This workflow make possible full text search within different sparql point made available by the Bio2RDF project.

Created: 2009-01-19

Credits: Francois Belleau

Taverna 2

Uploader

Francois Belleau

Triplify namespace XREF list from GO, LSRN... (1)

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TAG: banff_manifesto, xref, bio2rdf, rdfTAG: banff_manifesto, xref, bio2rdf, rdf, mashup Triplify namespace XREF list from GO, LSRN, NCBI and UniProt [myexperiment:xref_namespace2rdf] TAG: banff_manifesto, xref, bio2rdf, rdf TAG: banff_manifesto, xref, bio2rdf, rdf