What is Paget's disease sparql query example
Created: 2009-01-20 03:34:08
SELECT distinct ?s1
FROM <http://atlas.bio2rdf.org/sparql>
WHERE {
?s1 ?p1 ?o1 .
?o1 bif:contains "paget" .
FILTER( regex(?s1, "omim")
OR regex(?s1, "geneid") OR regex(?s1, "uniprot"))
}
followed by
SELECT ?type1, count(*)
FROM <http://localhost:8890/sparql>
WHERE {
?s1 ?p1 ?o1 .
?o1 bif:contains "paget" .
?s1
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Workflow Components
Authors (1)
Titles (1)
What is Paget's disease sparql query example |
Descriptions (0)
Dependencies (0)
Processors (8)
Name |
Type |
Description |
geneid_omim_uniprot_pubmed |
stringconstant |
Valuegeneid,omim,uniprot,pubmed |
paget |
stringconstant |
Valuepaget |
Split_string_into_string_list |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = ",";
if (regex != void) {
regexString = regex;
}
String[] result = string.split(regexString);
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
}
|
sponge_uri |
workflow |
|
text_search_by_namespace |
workflow |
|
html2uris |
workflow |
|
localhost_8890_sparql |
localworker |
ScriptURL inputURL = null;
if (base != void) {
inputURL = new URL(new URL(base), url);
}
else {
inputURL = new URL(url);
}
URLConnection con = inputURL.openConnection();
InputStream in = con.getInputStream();
InputStreamReader isr = new InputStreamReader(in);
Reader inReader = new BufferedReader(isr);
StringBuffer buf = new StringBuffer();
int ch;
while ((ch = inReader.read()) > -1) {
buf.append((char)ch);
}
inReader.close();
contents = buf.toString();
//String NEWLINE = System.getProperty("line.separator");
//
//URL inputURL = null;
//if (base != void) {
// inputURL = new URL(new URL(base), url);
//} else {
// inputURL = new URL(url);
//}
//StringBuffer result = new StringBuffer();
//BufferedReader reader = new BufferedReader(new InputStreamReader(inputURL.openStream()));
//String line = null;
//while ((line = reader.readLine()) != null) {
// result.append(line);
// result.append(NEWLINE);
//}
//
//contents = result.toString();
|
sparql_query |
stringconstant |
Valuehttp://localhost:8890/sparql?default-graph-uri=&should-sponge=&query=SELECT+%3Ftype1%2C+count(*)%0D%0AWHERE+{%0D%0A++%3Fs1+%3Fp1+%3Fo1+.+%0D%0A++%3Fo1+bif%3Acontains+%22paget%22+.%0D%0A++%3Fs1+%3Chttp%3A%2F%2Fwww.w3.org%2F1999%2F02%2F22-rdf-syntax-ns%23type%3E+%3Ftype1+.%0D%0A++FILTER+(regex(%3Ftype1%2C+%22http%3A%2F%2Fbio2rdf.org%2F%22))+%0D%0A}&format=text%2Fhtml&debug=on |
Beanshells (3)
Name |
Description |
Inputs |
Outputs |
sponge_uri |
|
uri
|
sparql_xml
|
text_search |
|
string
namespace
|
html
|
html2uri |
|
html
|
uris
|
Outputs (4)
Name |
Description |
out1 |
|
out2 |
|
out3 |
|
out4 |
|
Datalinks (10)
Source |
Sink |
geneid_omim_uniprot_pubmed:value |
Split_string_into_string_list:string |
html2uris:uris |
sponge_uri:uri |
Split_string_into_string_list:split |
text_search_by_namespace:namespace |
paget:value |
text_search_by_namespace:string |
text_search_by_namespace:html |
html2uris:html |
sparql_query:value |
localhost_8890_sparql:url |
text_search_by_namespace:html |
out1 |
html2uris:uris |
out2 |
sponge_uri:sparql_xml |
out3 |
localhost_8890_sparql:contents |
out4 |
Coordinations (1)
Controller |
Target |
sponge_uri |
localhost_8890_sparql |
Uploader
License
All versions of this Workflow are
licensed under:
Version 3 (latest)
(of 3)
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(People/Groups)
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Favourited By (1)
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