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Items tagged with "metagenomics" (20)

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Owner
Avatar André Domingues
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Network-member Biosurfactants and Biodegradation

Unique name: biosurf
Created: Wednesday 28 October 2015 11:25:54 (UTC)

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Workflows (19)
Taverna 2
Uploader
4077?size=60x60 De Antonio Fernandez-Guerra

Workflow Microbial Metagenomic Trait Statistical An... (9)

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This workflow retrieves the following microbial metagenomic traits from the Microbial Metagenomic Trait Database: -GC content -Variance of GC content -Dinucleotides -Number of rRNA -Codon usage -Amino acid composition -Acidic to basic amino acids ratio -% of Transcriptional factors -% of classified reads -Functional content -Functional diversity -Taxonomic content -Taxonomic diversity After the retrieval performs the ecological analyses described in Barberan et al. 2012 (http://dx.doi.or...

Created: 2012-12-19 | Last updated: 2014-11-12

Credits: User Antonio Fernandez-Guerra User Renzo User Peliny Network-member BioVeL

Taverna 2
Uploader
Avatar Renzo
Project Biovel

Workflow Microbial Metagenomic Trait Calculation an... (3)

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This workflow calculates the microbial traits of your metagenome and retrieves additional traits data from the Microbial Metagenomic Trait Database http://mb3is.megx.net/mg-traits. The list of traits: - GC content - Variance of GC content - Dinucleotides - Number of rRNA - Codon usage - Amino acid composition - Acidic to basic amino acids ratio - % of Transcriptional factors - % of classified reads - Functional content - Functional diversity - Taxonomic content - Taxonomic diversity As ...

Created: 2014-10-03 | Last updated: 2015-06-12

Credits: User Renzo User Antonio Fernandez-Guerra

Attributions: Workflow Microbial Metagenomic Trait Statistical Analysis Workflow

Galaxy
Uploader
Avatar Bruno Fosso

Workflow BioMaS Illumina Workflow (1)

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BioMaS (Bioinformatic analysis of Metagenomic AmpliconS) is a bioinformatic pipeline designed to support biomolecular researchers involved in taxonomic studies of environmental microbial communities by a completely automated workflow, comprehensive of all the fundamental steps, from raw sequence data arrangement to final taxonomic identification, that are absolutely required in a typical Meta-barcoding HTS-based experiment. This BioMaS version allows the analysis of both bacterial a...

Created: 2014-11-27 | Last updated: 2014-11-27

Credits: User Pasquale Notarangelo

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 1-2 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server

Created: 2016-05-13 | Last updated: 2017-04-17

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 1-1 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 1-3 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 1-4 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for remapping in Use... (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2016-05-13

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 2-1 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 2-2 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedoc Mississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for remapping in Use... (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2016-05-13

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 3-1 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 3-2 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for Use Case 3-3 (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server

Created: 2016-05-13 | Last updated: 2016-05-13

Galaxy
Uploader
Avatar Chris

Workflow AmrPlusPlus Paired Workflow (9)

AmrPlusPlus is a Galaxy-based metagenomics pipeline that is intuitive and easy to use. The pipeline takes advantage of current and new tools to help identify and characterize resistance genes from metagenomic sequence data.

Created: 2016-08-05 | Last updated: 2016-11-18

Credits: User Chris

Galaxy
Uploader
Avatar Chris

Workflow AmrPlusPlus Single Workflow (2)

AmrPlusPlus is a Galaxy-based metagenomics pipeline that is intuitive and easy to use. The pipeline takes advantage of current and new tools to help identify and characterize resistance genes from metagenomic sequence data.

Created: 2016-08-12 | Last updated: 2017-01-05

Credits: User Chris

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Workflow for small RNA profil... (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server

Created: 2016-10-10 | Last updated: 2016-10-10

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Trinity test in Use Case 2-2 (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-10-10 | Last updated: 2016-10-10

Galaxy
Uploader
4421?size=60x60 Christophe Antoniewski

Workflow Metavisitor: Spades test in Use Case 2-2 (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-10-10 | Last updated: 2016-10-10

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