Microbial_Metagenomimetagenome_data_url00
https://colab.mpi-bremen.de/micro-b3/svn/taverna-workflows/mg-traits/trunk/example-data/test_11K_reads.fasta
2014-08-21 09:59:03.40 UTC
Add a link (URL) to a fasta file of your metagnome nucleotide sequences. The workflow expects a pre-processed fasta file of reads or contigs without replicated sequences. File can be gzipped.
2014-08-21 09:58:57.838 UTC
environment00
marine benthic biome
2014-08-12 12:55:55.351 UTC
We strongly encorauge the use of environmental ontologies (http://environmentontology.org/)
Please find the biome terms here: http://ols.wordvis.com/ont=ENVO:q=biome
2014-08-12 13:03:04.324 UTC
sample_label00
A label for the sample.
2014-08-12 13:04:42.91 UTC
test_label
2014-02-15 12:00:52.175 UTC
metagenomes_list00
"Id","Sample Name","Sample Environment"
"mg660-JCVI_SMPL_1103283000008","GS002","Coastal"
"mg653-JCVI_SMPL_1103283000001","GS000a","Open Ocean"
"mg657-JCVI_SMPL_1103283000005","GS001a","Open Ocean"
"mg733-JCVI_SMPL_GS112a","GS112a","Open Ocean"
"mg723-JCVI_SMPL_GS117a","GS117a","Coastal sample"
"mg719-JCVI_SMPL_GS113","GS113","Open Ocean"
"mg720-JCVI_SMPL_GS114","GS114","Open Ocean"
"mg751-JCVI_SMPL_GS115","GS115","Open Ocean"
"mg670-JCVI_SMPL_1103283000018","GS012","Estuary"
"mg750-JCVI_SMPL_GS110a","GS110a","Open Ocean"
2014-11-10 15:02:59.539 UTC
A list or file of metagenomes present in the Microbial Metagenomic Trait Database (http://mb3is.megx.net/mg-traits)
Select the metagenomes and downlad the file list from http://blast2.mpi-bremen.de/mg-traits/samples
To run the workflow, at least select more than 10 metagenomes.
2014-11-10 15:03:21.657 UTC
sample_description00
describing text
2014-08-21 09:46:46.819 UTC
Text describing the environmental sample
2014-08-21 09:46:37.578 UTC
sample_name00
env_sample_name
2014-08-21 09:46:20.48 UTC
A name of the environmental sample.
2014-08-21 09:46:12.530 UTC
oauth_access_token00
The OAuth access token from your megx.net account at http://mb3is.megx.net/apps (for details visit https://wiki.biovel.eu/display/doc/Microbial+Metagenomic+Trait+Calculation+and+Statistical+Analysis)
2014-08-21 09:55:06.767 UTC
oauth_access_token_secret00
The OAuth access token secret from your megx.net account at http://mb3is.megx.net/apps (for details visit https://wiki.biovel.eu/display/doc/Microbial+Metagenomic+Trait+Calculation+and+Statistical+Analysis)
2014-08-21 09:55:29.485 UTC
oauth_app_id00
The OAuth app id from your megx.net account at http://mb3is.megx.net/apps (for details visit https://wiki.biovel.eu/display/doc/Microbial+Metagenomic+Trait+Calculation+and+Statistical+Analysis)
2014-08-21 09:54:15.507 UTC
oauth_app_secret00
The OAuth app secret from your megx.net account at http://mb3is.megx.net/apps (for details visit https://wiki.biovel.eu/display/doc/Microbial+Metagenomic+Trait+Calculation+and+Statistical+Analysis)
2014-08-21 09:54:00.683 UTC
job_address1workfow_error_message3mgID3poll_status1start_job_response_body0job_redirction_port0funcMantel3phyloMantel3bivariatePlot3traitsPCAPlot3traits_biplot3summary_traits3pcaLog3taxonamicNMDSPlot3functionalNMDSPlot3functionalNMDStext3functionalNMDSlog3taxonomicNMDSlog3taxonomicNMDStext3amino_acid_content3codon_usage3di_nucleotide_odds_ratio3functional_content3simple_traits3taxonomic_content3pol_job_actual_url1poll_sample_label1create_url_for_launch_jobsample_label0url0sample_description0sample_name0environment0url_query_string00
Concatenates input data as URL query string for subsequent usage in http requests.
2014-08-20 09:50:20.512 UTC
net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
sample_label
0
'text/plain'
java.lang.String
true
environment
0
'text/plain'
java.lang.String
true
url
0
text/plain
java.lang.String
true
sample_description
0
text/plain
java.lang.String
true
sample_name
0
text/plain
java.lang.String
true
url_query_string
0
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringConcat
UserNameHere
2014-08-20 09:46:08.282 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_match_group_numbervalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeLocation_header_value_regexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
Location: (.*)
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_job_addressgroup0regex0stringlist1filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
group
0
'text/plain'
java.lang.String
true
filteredlist
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_public_idstring0last00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity
string
0
text/plain
java.lang.String
true
last
0
0
workflow
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokepoll_for_job_statussample-label0redirection00responseBody00status00actualURL00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/jobs/{sample-label}
text/csv
application/xml
String
true
true
true
true
true
sample-label
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop
<activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns="">
<inputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<name>status</name>
<depth>0</depth>
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
</inputs>
<outputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<name>loop</name>
<depth>0</depth>
<granularDepth>0</granularDepth>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
</outputs>
<classLoaderSharing>workflow</classLoaderSharing>
<localDependencies />
<artifactDependencies />
<script>loop = "" + status.equals("202");
if ("true".matches(loop)) {
Thread.sleep(90000);
}</script>
<dependencies />
</net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity>
true
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
3000
12000
5
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeevaluate_job_statuscondition0fail_flags11pass_flags11
Checks if job failed or succeeded.
2014-08-20 09:55:48.110 UTC
net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity
condition
0
text/plain
java.lang.String
true
pass_flags
1
1
fail_flags
1
1
workflow
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesuccessfulJobSentinel0response_body0mgID00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefailedJobSentinel0response_body0workflow_error_message00
Handles a failed job submission.
2014-08-20 09:52:25.636 UTC
net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeparse_job_statusstring0returnCode00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
returnCode
0
0
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2014-11-10 14:21:30.88 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST___OAuth_1_0a_ServiceinputBody0oauth_access_token0oauth_access_token_secret0oauth_client_secret0oauth_client_id0responseHeaders11redirection00responseBody00uk.ac.soton.mib104.t2.activitiesoauth-activity0.0.3uk.ac.soton.mib104.t2.activities.oauth.OAuth10aRESTActivity
POST
http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/jobs
text/csv
application/x-www-form-urlencoded
String
true
true
true
true
false
oauth_scope
java.lang.String
oauth_client_id
java.lang.String
oauth_access_token_secret
java.lang.String
oauth_client_secret
java.lang.String
oauth_access_token
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeconcatenate_DB_and_crunched_mgIDsmg_list0mg_jobid0full_mg_list00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
mg_list
0
'text/plain'
java.lang.String
true
mg_jobid
0
'text/plain'
java.lang.String
true
full_mg_list
0
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringConcat
UserNameHere
2014-08-21 08:49:18.184 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMicrobial_Metagenomimg_list0funcMantel00phyloMantel00bivariatePlot00traitsPCAPlot00traits_biplot00summary_traits00pcaLog00taxoNMDSPlot00funcNMDSPlot00funcNMDSTxt00funcNMDSLog00taxoNMDSLog00taxoNMDStxt00aa_content00codon_usage00di_nucleotide_odds_ratio00functional_content00simple_traits00taxonomic_content00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecreate_url_for_launch_jobsample_labelcreate_url_for_launch_joburlcreate_url_for_launch_jobsample_descriptioncreate_url_for_launch_jobsample_namecreate_url_for_launch_jobenvironmentget_job_addressgroupget_job_addressregexget_job_addressstringlistget_public_idstringpoll_for_job_statussample-labelevaluate_job_statusconditionsuccessfulJobSentinelsuccessfulJobresponse_bodyfailedJobSentinelfailedJobresponse_bodyparse_job_statusstringREST___OAuth_1_0a_ServiceinputBodyREST___OAuth_1_0a_Serviceoauth_access_tokenREST___OAuth_1_0a_Serviceoauth_access_token_secretREST___OAuth_1_0a_Serviceoauth_client_secretREST___OAuth_1_0a_Serviceoauth_client_idconcatenate_DB_and_crunched_mgIDsmg_listconcatenate_DB_and_crunched_mgIDsmg_jobidMicrobial_Metagenomimg_listjob_addressworkfow_error_messagemgIDpoll_statusstart_job_response_bodyjob_redirction_portfuncMantelphyloMantelbivariatePlottraitsPCAPlottraits_biplotsummary_traitspcaLogtaxonamicNMDSPlotfunctionalNMDSPlotfunctionalNMDStextfunctionalNMDSlogtaxonomicNMDSlogtaxonomicNMDStextamino_acid_contentcodon_usagedi_nucleotide_odds_ratiofunctional_contentsimple_traitstaxonomic_contentpol_job_actual_urlpoll_sample_label
618d89fe-0f7d-4624-b4e4-8aa3e335ac4c
2014-02-14 07:34:38.690 UTC
a410e773-36df-4158-859b-29164f7ec381
2014-02-13 15:53:56.945 UTC
8b2e49b4-a297-46e3-8744-1099a30ef753
2014-02-13 16:40:36.342 UTC
6fc914ce-b184-4f4b-a4a1-401e91c09569
2014-08-20 10:30:21.252 UTC
971d97f2-5142-4486-ae2c-941b8ef5b371
2014-11-10 13:44:31.30 UTC
dea8d100-87e1-40e0-bf79-4ce7185fb078
2014-02-13 13:26:04.215 UTC
f6e9765b-0911-4fb0-85e0-936c60e5fc56
2014-02-13 16:20:43.961 UTC
2af9469b-1ae5-4f57-bf62-62558c0513c0
2014-08-20 18:06:25.877 UTC
b6d8f87f-2b3f-4044-b058-576db15dd50a
2014-02-13 15:54:50.360 UTC
This workflow calculates the microbial traits of your metagenome and retrieves additional traits data from the Microbial Metagenomic Trait Database http://mb3is.megx.net/mg-traits.
The list of traits:
- GC content
- Variance of GC content
- Dinucleotides
- Number of rRNA
- Codon usage
- Amino acid composition
- Acidic to basic amino acids ratio
- % of Transcriptional factors
- % of classified reads
- Functional content
- Functional diversity
- Taxonomic content
- Taxonomic diversity
As described in Barberan et al. 2012 (http://dx.doi.org/10.1111/j.1365-294X.2011.05383.x)
Furhter documentation: https://wiki.biovel.eu/display/doc/Metagenomic+Workflows
2014-10-03 19:03:59.974 UTC
Microbial Metagenomic Trait Calculation and Statistical Analysis Workflow
2014-08-20 18:05:31.821 UTC
d37c4f76-a388-416a-b2a5-6168cd311fdf
2014-02-15 19:36:58.346 UTC
28f5ed39-d451-4ee0-8da4-ed55cdb937c5
2014-11-10 16:50:59.766 UTC
5fb374bc-14dc-4927-84c0-11d846654dff
2014-02-15 16:23:42.983 UTC
f3ee35c0-ce5d-4691-938f-c8ea362c5fbf
2014-02-10 15:31:48.620 UTC
91b6e278-5d2e-4da7-b023-e33bf545ab08
2014-02-15 11:49:56.73 UTC
0bd00629-6ea5-4d49-81b2-a8396ddc484a
2014-08-21 09:02:16.521 UTC
f139c4cd-a56a-4719-86f2-7bb97a58d51d
2014-08-21 09:48:37.770 UTC
fcf6d77f-c289-4c89-8821-a9e0648a727d
2014-02-10 18:02:24.18 UTC
6a12f9e0-ee2c-4f92-95fc-1fa589c85042
2014-10-03 19:04:05.956 UTC
64798a55-b2de-4a16-b825-8a6959143f00
2014-08-22 10:27:30.484 UTC
f88e3e36-ecf8-4c7a-a6f7-e54df8ac5204
2014-08-12 13:30:06.383 UTC
c80d1845-ba96-4bdc-b028-de6463468daf
2014-02-13 16:42:29.673 UTC
1bbca299-53a5-48a7-ac53-5a4b77999d9c
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Workflow6mgID_list00functional_content0functional_contentid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/functional-content
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String
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false
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java.lang.String
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1.0
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string
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0
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UserNameHere
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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UserNameHere
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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1000
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\n
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1000
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
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workflow
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1
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4168c5a4-77ae-42cc-a85b-b7136903dcea
2014-03-20 14:50:12.598 UTC
4c151363-961c-4703-9f39-a4e1c4ee06de
2014-03-20 17:28:32.78 UTC
9c038971-5ba5-439a-a4fa-ee3f393aa5f7
2014-03-20 16:20:56.834 UTC
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2014-03-20 16:47:33.803 UTC
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2014-03-20 16:24:53.195 UTC
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2014-03-20 17:06:05.170 UTC
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2014-03-21 15:26:23.707 UTC
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2014-03-20 15:22:43.394 UTC
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2014-03-20 15:21:58.848 UTC
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2014-03-20 16:00:05.407 UTC
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2014-03-20 14:50:48.877 UTC
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2014-03-20 15:26:46.493 UTC
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2014-03-24 17:50:23.373 UTC
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2014-03-20 17:29:26.317 UTC
711934ae-6b8c-493b-a095-ed559b1a21a6
2014-03-20 16:05:26.581 UTC
Workflow6mg_list00aa0codon0taxonomic_content0dinuc0simple_traits0functional_content0Filter_list_of_strings_extracting_match_to_a_regex_2regex0in10id00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
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in1
0
text/plain
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0
0
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UserNameHere
2014-03-25 17:17:55.824 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecomma_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
mg(.*)-(.*)
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1
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_functionalregex0string0data11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
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UserNameHere
2014-03-20 14:51:15.610 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
inputlist
2
l(l(''))
[B
true
outputlist
1
l('')
1
workflow
org.embl.ebi.escience.scuflworkers.java.FlattenList
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeaa_contentmgID_list0aa_content00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_aminoacid_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecodon_usagemgID_list0codon_usage00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokedinucmgID_list0di_nucleotide_odds_ratio00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokefunctional_contentmgID_list0functional_content00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokesimple_traitsmgID_list0simple_traits00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketaxonomic_contentmgID_list0taxonomic_content00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regex_2regexFilter_list_of_strings_extracting_match_to_a_regex_2in1remove_headers_functionalregexremove_headers_functionalstringFlatten_Listinputlistaa_contentmgID_listmerge_aminoacid_data_2stringlistcodon_usagemgID_listdinucmgID_listfunctional_contentmgID_listsimple_traitsmgID_listtaxonomic_contentmgID_listaacodontaxonomic_contentdinucsimple_traitsfunctional_content
267ec7e8-a717-43ec-8647-7cb22d578e8b
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2014-03-20 16:11:37.243 UTC
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2014-03-20 17:08:20.374 UTC
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2014-03-20 15:32:38.604 UTC
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2014-03-20 15:09:51.709 UTC
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2014-03-20 15:21:18.570 UTC
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2014-03-20 16:38:57.713 UTC
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2014-03-20 15:24:01.882 UTC
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2014-03-24 18:04:23.341 UTC
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2014-03-20 17:32:59.484 UTC
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2014-03-25 17:18:03.677 UTC
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2014-03-20 14:23:12.259 UTC
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2014-03-24 17:51:13.604 UTC
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2014-03-20 16:03:06.558 UTC
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2014-03-20 14:51:44.41 UTC
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2014-03-20 15:18:52.392 UTC
75496257-0149-4ebd-81fb-e87627dd0a4e
2014-03-20 15:06:52.151 UTC
Metagenomic_Traits_Sdinuc00
File containing di-nucelotide frequencies. Example is from GOS dataset.
Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_dinuc.txt
2013-08-07 09:32:15.824 UTC
http://build.mygrid.org.uk/taverna/metagenomics/gos_dinuc.txt
2013-08-07 10:21:38.772 UTC
codon00
http://build.mygrid.org.uk/taverna/metagenomics/gos_codon.txt
2013-08-07 10:21:44.783 UTC
File containing the codon frequencies of predicted ORFs. Example is from GOS dataset.
Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_codon.txt
2013-08-07 09:32:11.868 UTC
aa00
http://build.mygrid.org.uk/taverna/metagenomics/gos_aa.txt
2013-08-07 10:21:52.660 UTC
File containing the amino acid frequencies of predicted ORFs. Example is from GOS dataset.
Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_aa.txt
2013-08-07 09:32:06.255 UTC
func00
File containing a table of frequencies of functional annotation per sample. Column= functional annotation with first column = sampling site/sample, row = frequencies per sample.
Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_functional.txt
2013-08-07 09:32:19.812 UTC
http://build.mygrid.org.uk/taverna/metagenomics/gos_functional.txt
2013-08-07 10:21:32.516 UTC
phylo00
File containing a table of frequencies of taxonomic group per sample. Column= taxonomic annotation with first column = sampling site/sample, row = frequencies per sample.
Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_phylo.txt
2013-08-07 09:32:24.321 UTC
http://build.mygrid.org.uk/taverna/metagenomics/gos_phylo.txt
2013-08-07 09:30:29.683 UTC
traits00
Two column file specifying metagenomic description, column title must be Description
e.g. A header row could be like this
Site Description TotalMb NumberReads GC varGC rRNA Genes EGS ABratio TF Classified
Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_traits.txt
2013-08-07 09:32:02.179 UTC
http://build.mygrid.org.uk/taverna/metagenomics/gos_traits.txt
2013-08-07 10:22:45.40 UTC
funcMantel0phyloMantel0funcNmdsPlot0funcNmdsTxt0phyloNmdsPlot0phyloNmdsTxt0bivariatePlot0traitsBiplot0traitsPcaPlot0summary_traits0pcaLog0traitsPCAlog0phyloNMDSLog0funcNMDSLog0NMDStraitsIn0phyloIn0funcIn0phylo_nmds00func_nmds00phyloNmds00funcNmds00phyloNmdsLog00funcNmdsLog00
Perform Non-MultiDimensional Scaling analysis of traits
2012-12-14 16:51:49.226 UTC
net.sf.taverna.t2.activitiesrshell-activity1.5net.sf.taverna.t2.activities.rshell.RshellActivity
traitsIn
0
false
phyloIn
0
false
funcIn
0
false
phylo_nmds
0
0
func_nmds
0
0
phyloNmdsLog
0
0
funcNmdsLog
0
0
phyloNmds
0
0
funcNmds
0
0
false
localhost
6311
false
false
traitsIn
TEXT_FILE
phyloIn
TEXT_FILE
funcIn
TEXT_FILE
phylo_nmds
PNG_FILE
func_nmds
PNG_FILE
phyloNmdsLog
TEXT_FILE
funcNmdsLog
TEXT_FILE
phyloNmds
TEXT_FILE
funcNmds
TEXT_FILE
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeread_files_data_tranformation_pca_calculationtraits0phylo0func0aa0codon0dinuc0summary_traits00pcaLog00
Read input ports, transform data, calculate pkylogenetic and functional diversity and get first component for complex traits
2012-12-14 12:21:03.315 UTC
net.sf.taverna.t2.activitiesrshell-activity1.5net.sf.taverna.t2.activities.rshell.RshellActivity
dinuc
0
false
codon
0
false
aa
0
false
func
0
false
traits
0
false
phylo
0
false
pcaLog
0
0
summary_traits
0
0
false
localhost
6311
false
false
dinuc
TEXT_FILE
codon
TEXT_FILE
aa
TEXT_FILE
func
TEXT_FILE
traits
TEXT_FILE
phylo
TEXT_FILE
pcaLog
TEXT_FILE
summary_traits
TEXT_FILE
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMantelaaIn0traitsIn0dinucIn0codonIn0funcIn0phyloIn0phyloMantel00funcMantel00
Performs Mantel test to the different trait matrices
2012-12-14 12:35:00.746 UTC
net.sf.taverna.t2.activitiesrshell-activity1.5net.sf.taverna.t2.activities.rshell.RshellActivity
traitsIn
0
false
dinucIn
0
false
aaIn
0
false
codonIn
0
false
phyloIn
0
false
funcIn
0
false
phyloMantel
0
0
funcMantel
0
0
false
localhost
6311
false
false
traitsIn
TEXT_FILE
dinucIn
TEXT_FILE
aaIn
TEXT_FILE
codonIn
TEXT_FILE
phyloIn
TEXT_FILE
funcIn
TEXT_FILE
phyloMantel
TEXT_FILE
funcMantel
TEXT_FILE
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePCAtraitsIn0bivariatePlot00traitsBiplot00traitsPcaPlot00traitsPcaLog00
Perform a PCA of the traits
2012-12-14 16:52:13.876 UTC
net.sf.taverna.t2.activitiesrshell-activity1.5net.sf.taverna.t2.activities.rshell.RshellActivity
traitsIn
0
false
bivariatePlot
0
0
traitsBiplot
0
0
traitsPcaPlot
0
0
traitsPcaLog
0
0
false
localhost
6311
false
false
traitsIn
TEXT_FILE
bivariatePlot
PNG_FILE
traitsBiplot
PNG_FILE
traitsPcaPlot
PNG_FILE
traitsPcaLog
TEXT_FILE
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeNMDStraitsInNMDSphyloInNMDSfuncInread_files_data_tranformation_pca_calculationtraitsread_files_data_tranformation_pca_calculationphyloread_files_data_tranformation_pca_calculationfuncread_files_data_tranformation_pca_calculationaaread_files_data_tranformation_pca_calculationcodonread_files_data_tranformation_pca_calculationdinucMantelaaInManteltraitsInManteldinucInMantelcodonInMantelfuncInMantelphyloInPCAtraitsInfuncMantelphyloMantelfuncNmdsPlotfuncNmdsTxtphyloNmdsPlotphyloNmdsTxtbivariatePlottraitsBiplottraitsPcaPlotsummary_traitspcaLogtraitsPCAlogphyloNMDSLogfuncNMDSLog
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2012-12-07 09:56:10.983 UTC
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2012-12-13 18:43:13.319 UTC
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2013-07-09 16:37:58.458 UTC
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2012-07-02 20:35:52.739 UTC
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2012-07-02 21:14:43.838 UTC
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2013-07-05 10:25:26.148 UTC
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2014-03-24 19:05:19.109 UTC
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2013-08-07 09:31:57.617 UTC
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2012-07-02 21:41:47.335 UTC
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2012-07-07 09:29:10.86 UTC
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2014-03-25 07:11:42.735 UTC
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2012-07-02 15:10:28.607 UTC
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2014-03-25 17:48:56.566 UTC
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2014-03-25 21:54:10.600 UTC
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2012-07-03 13:52:04.119 UTC
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2012-07-02 14:04:58.384 UTC
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2012-07-02 14:18:15.172 UTC
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2012-07-02 21:36:58.365 UTC
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2014-03-21 15:33:33.774 UTC
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2012-12-13 18:44:31.773 UTC
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2012-07-07 14:00:01.528 UTC
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2012-07-02 20:35:07.333 UTC
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2012-07-02 21:51:04.492 UTC
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2012-07-07 12:39:15.72 UTC
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2012-07-07 15:11:33.719 UTC
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2012-07-07 15:31:42.540 UTC
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2012-07-02 21:51:34.813 UTC
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2013-07-09 16:33:42.764 UTC
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2012-07-06 22:15:32.889 UTC
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2014-03-25 18:02:13.110 UTC
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2012-07-06 22:02:29.366 UTC
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2012-07-07 05:35:22.124 UTC
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2014-10-27 15:20:05.643 UTC
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2012-07-06 16:08:25.340 UTC
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2012-07-02 14:28:42.506 UTC
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2013-08-07 09:09:43.892 UTC
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2014-11-10 15:29:58.546 UTC
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2014-03-25 07:10:42.90 UTC
518f69b4-5764-438b-a1c5-33b6a36bbbfd
2012-07-06 06:22:25.13 UTC
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2012-07-02 21:16:30.691 UTC
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2012-07-06 20:58:11.656 UTC
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2012-12-13 18:33:45.379 UTC
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2012-07-06 14:35:18.742 UTC
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2012-07-02 14:08:42.477 UTC
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2013-03-27 12:10:08.248 UTC
23ec334e-9df9-4750-9996-db4bb38abb81
2014-03-25 07:14:07.702 UTC
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2012-07-06 08:29:49.524 UTC
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2013-07-05 10:25:56.907 UTC
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2012-07-03 11:12:49.853 UTC
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2012-12-13 18:12:10.196 UTC
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2012-07-02 14:20:50.239 UTC
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2012-07-06 22:08:54.296 UTC
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2012-07-06 06:17:28.285 UTC
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2012-07-07 09:15:48.869 UTC
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2012-07-06 06:29:39.54 UTC
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2012-07-02 14:42:37.41 UTC
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2012-12-14 11:33:13.782 UTC
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2014-03-25 18:07:07.478 UTC
24b1a08e-0a72-436c-86f1-1660b4eca8d6
2012-07-02 20:36:36.981 UTC
Metagenomic Traits Statistical Analysis
2013-08-11 22:16:00.965 UTC
3517f786-e415-4910-a1b4-1f8c936305fa
2014-03-25 21:37:17.394 UTC
6ebb87bd-34ff-482f-86fb-1a7668e5d582
2013-08-07 10:22:00.732 UTC
39a605a0-9f16-4bc8-9c35-5713f32baceb
2012-07-03 11:20:34.42 UTC
41cc6fd7-1f83-42e1-9ac4-2fcd73b03274
2012-07-04 22:49:26.319 UTC
cdef0c09-57ce-40ee-9569-7f8f08ec4887
2012-07-07 14:03:34.193 UTC
45d2baaa-e86c-4a7e-ae85-97a318076241
2012-07-05 07:25:38.631 UTC
e2118f6f-a91b-4d1b-8e99-69e32e4f98ec
2012-07-02 21:32:51.460 UTC
d08e1fb6-dc6b-4a66-8cc7-05e4d11c7a21
2013-07-05 10:27:51.748 UTC
Antonio Fernandez-Guerra, Pelin Yilmaz and Renzo Kottmann
2012-12-07 09:54:59.80 UTC
44d039ba-9cc5-44fc-8bf3-965a21f3a9b7
2012-07-05 07:50:40.993 UTC
7cecea87-74df-46b2-9f81-f2971a3767ae
2012-07-03 11:05:47.571 UTC
9dfa1fb5-2545-47f8-8a8b-146f2d36fef6
2013-08-07 10:23:06.719 UTC
9e42339c-41fb-4df1-a1db-33a5005a160c
2012-07-02 14:14:35.477 UTC
89506d36-1408-40ca-8420-c785fbbe1a2f
2012-07-06 21:44:58.232 UTC
ce5ac09f-4435-40d1-a45e-76a64849b5cb
2012-07-07 08:45:08.989 UTC
3132b588-475a-46a2-9d74-24e119a8660e
2012-12-17 15:10:10.503 UTC
2022592b-75a9-425c-8747-92b58394666d
2012-07-07 05:44:54.69 UTC
The Metagenomic Traits Statistical Analysis workflow computes the multivariate statistics related to the community traits outlined in Barberan et al. 2012 "Exploration of community traits as ecological markers in microbial metagenomes". The traits included in the statistical analyses range from GC content to functional diversity, and deliver a valuable set of ecological markers in order discriminate between habitats or geographic locations. Furthermore, intertrait relationships can be used as habitat descriptors or indicators of artefacts during sample processing. Overall, these metagenomics community traits approach, here combined in a single workflow, helps to interpret metagenomics data to gain a full understanding of microbial community patterns in a rigorous ecological framework.
2012-12-20 11:23:51.52 UTC
31acdc4b-202c-4fc4-98de-b7c24d125681
2012-12-13 18:49:21.430 UTC
bc25cbc7-ca56-4260-969c-69cd0963dfe2
2012-07-05 07:17:02.529 UTC
719899f1-de14-420a-afb2-46945f05ac6e
2012-08-30 16:51:56.85 UTC
d7e4cddb-de29-43b8-8a59-a13e54deacdb
2012-07-04 23:12:30.44 UTC
4f239021-b83c-4260-90b5-0fc131bc117e
2012-07-03 10:49:49.177 UTC
a43b5a0e-a093-4f2c-be85-1210039b73ce
2014-03-25 21:40:34.84 UTC
f3401ce0-6538-4b66-8f35-7b94429346d0
2012-07-02 15:06:10.663 UTC
Workflow6mgID_list00codon_usage0codon_usageid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/codon-usage
text/csv
application/xml
String
false
false
false
false
false
id
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
5
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_codon_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
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l('text/plain')
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seperator
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'text/plain'
java.lang.String
true
concatenated
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0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_aastring0regex0data00header00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
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0
'text/plain'
java.lang.String
true
data
0
0
header
0
0
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2014-03-20 15:32:15.158 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
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strippedlist
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l('text/plain')
1
workflow
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_codon_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
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1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
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0
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split
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l('text/plain')
1
workflow
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Unionlist11list21union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
list1
1
l('text/plain')
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list2
1
l('text/plain')
java.lang.String
true
union
1
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringSetUnion
UserNameHere
2014-03-20 17:32:23.586 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecodon_usageidmerge_codon_datastringlistremove_headers_aastringremove_headers_aaregexRemove_String_Duplicatesstringlistmerge_codon_data_2stringlistSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexString_List_Unionlist1String_List_Unionlist2codon_usage
c8dcbcff-486a-4413-a1ba-d4b268a0aa4c
2014-03-23 16:41:30.158 UTC
afc23b88-6254-45b4-ac35-f05145050463
2014-03-20 15:32:38.604 UTC
9c038971-5ba5-439a-a4fa-ee3f393aa5f7
2014-03-20 16:20:56.834 UTC
01e312ba-1ab7-4d5e-9d6e-f474671e972a
2014-03-20 15:09:51.709 UTC
209d8560-f6b8-4a83-b2b0-4265af159d5e
2014-03-20 15:54:34.857 UTC
ff2a5fb7-7988-4710-a715-2a11c4ee0c68
2014-03-20 16:49:07.64 UTC
8bdf1774-17f3-4ed5-9378-4e711a57ce63
2014-03-20 15:52:23.118 UTC
260c33c7-a73e-49fe-a912-a758572d674b
2014-03-20 16:24:53.195 UTC
eac39443-bd8b-43c2-8911-2e4ed34bb3b9
2014-03-20 15:22:43.394 UTC
4168c5a4-77ae-42cc-a85b-b7136903dcea
2014-03-20 14:50:12.598 UTC
6a3ece39-742a-4555-9030-83b2d3dfe173
2014-03-20 17:05:00.812 UTC
90d48b43-011c-4970-9a69-b32ffa693f3c
2014-03-20 16:35:07.585 UTC
ab0cbf4f-b40d-476a-915d-f615bfdaeb97
2014-03-20 15:11:12.372 UTC
c00554ff-60bb-4728-8309-df3cba61274d
2014-03-20 15:18:52.392 UTC
711934ae-6b8c-493b-a095-ed559b1a21a6
2014-03-20 16:05:26.581 UTC
da9bf039-7ae5-48a5-9d18-c7b65c6c3229
2014-03-20 15:31:39.946 UTC
1d71417c-7bdd-46dd-9d6d-fe841d830510
2014-03-20 15:02:39.151 UTC
51fabdbe-60ca-4101-b801-6e29a3c7f5ef
2014-03-20 14:55:01.974 UTC
54c3cfdc-b815-4985-a5d5-763b74287d47
2014-03-20 15:24:01.882 UTC
28f3f714-474a-41f1-8a1b-ece92901e27c
2014-03-20 15:21:58.848 UTC
02b5aed6-a610-447b-be62-31519df13e2d
2014-03-20 15:21:18.570 UTC
6fe6403a-12b8-4bf3-9c94-5c13071e5f3e
2014-03-20 15:26:46.493 UTC
b757149c-4de5-4efe-a617-9519a4dba905
2014-03-20 14:23:12.259 UTC
5aed8676-fd46-421a-9a01-7cb2d5093e06
2014-03-20 17:32:25.987 UTC
8443e8d7-f693-43d8-a052-6350829714dc
2014-03-20 14:27:04.950 UTC
26b9b73b-1d4e-41cb-9500-a12d33047981
2014-03-21 15:30:21.385 UTC
75496257-0149-4ebd-81fb-e87627dd0a4e
2014-03-20 15:06:52.151 UTC
3d5ac55c-192a-40b6-b165-b8eb10f68a9d
2014-03-20 14:32:17.935 UTC
ca560582-fbca-4059-a5fe-c04ada19025b
2014-03-20 14:26:03.704 UTC
26227e50-77e8-4974-b387-5f37d523e007
2014-03-20 14:35:48.132 UTC
44889605-4bfd-431a-9e4f-ae75768ff9aa
2014-03-20 16:47:10.979 UTC
663492bc-20d7-40ed-a8f7-94388e54b723
2014-03-20 14:51:44.41 UTC
084de299-65fd-4e59-a94e-d5cb8991c979
2014-03-20 16:00:05.407 UTC
05ce0a02-1b79-4124-a5ba-e2aaa0e6abcc
2014-03-24 17:49:27.200 UTC
a8c7c7be-51eb-4e30-8dbb-daf7a1323f7c
2014-03-20 14:50:48.877 UTC
faaf079a-a799-471f-a608-67876a0aa7e1
2014-03-20 16:11:27.67 UTC
Workflow6mgID_list00aa_content0aminoacid_contentid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/amino-acid-content
text/csv
application/xml
String
false
false
false
false
false
id
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
5
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_aminoacid_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_aastring0regex0data00header00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
data
0
0
header
0
0
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2014-03-20 15:32:15.158 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
strippedlist
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Union_2list21list11union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
list1
1
l('text/plain')
java.lang.String
true
list2
1
l('text/plain')
java.lang.String
true
union
1
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringSetUnion
UserNameHere
2014-03-20 17:32:03.243 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_aminoacid_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
split
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeaminoacid_contentidmerge_aminoacid_datastringlistremove_headers_aastringremove_headers_aaregexRemove_String_DuplicatesstringlistString_List_Union_2list2String_List_Union_2list1merge_aminoacid_data_2stringlistSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexaa_content
faaf079a-a799-471f-a608-67876a0aa7e1
2014-03-20 16:11:27.67 UTC
75496257-0149-4ebd-81fb-e87627dd0a4e
2014-03-20 15:06:52.151 UTC
37a00080-d457-48cd-9985-a4263401694d
2014-03-20 17:32:05.796 UTC
8443e8d7-f693-43d8-a052-6350829714dc
2014-03-20 14:27:04.950 UTC
4168c5a4-77ae-42cc-a85b-b7136903dcea
2014-03-20 14:50:12.598 UTC
b3731d43-afe7-4337-92b5-e09b164c7169
2014-03-21 15:27:28.100 UTC
3d5ac55c-192a-40b6-b165-b8eb10f68a9d
2014-03-20 14:32:17.935 UTC
260c33c7-a73e-49fe-a912-a758572d674b
2014-03-20 16:24:53.195 UTC
eac39443-bd8b-43c2-8911-2e4ed34bb3b9
2014-03-20 15:22:43.394 UTC
afc23b88-6254-45b4-ac35-f05145050463
2014-03-20 15:32:38.604 UTC
0fdf8e26-be14-4571-9724-d3600e17eaf7
2014-03-24 17:49:45.751 UTC
084de299-65fd-4e59-a94e-d5cb8991c979
2014-03-20 16:00:05.407 UTC
8bdf1774-17f3-4ed5-9378-4e711a57ce63
2014-03-20 15:52:23.118 UTC
9c038971-5ba5-439a-a4fa-ee3f393aa5f7
2014-03-20 16:20:56.834 UTC
02b5aed6-a610-447b-be62-31519df13e2d
2014-03-20 15:21:18.570 UTC
a8c7c7be-51eb-4e30-8dbb-daf7a1323f7c
2014-03-20 14:50:48.877 UTC
01e312ba-1ab7-4d5e-9d6e-f474671e972a
2014-03-20 15:09:51.709 UTC
711934ae-6b8c-493b-a095-ed559b1a21a6
2014-03-20 16:05:26.581 UTC
b757149c-4de5-4efe-a617-9519a4dba905
2014-03-20 14:23:12.259 UTC
da9bf039-7ae5-48a5-9d18-c7b65c6c3229
2014-03-20 15:31:39.946 UTC
209d8560-f6b8-4a83-b2b0-4265af159d5e
2014-03-20 15:54:34.857 UTC
28f3f714-474a-41f1-8a1b-ece92901e27c
2014-03-20 15:21:58.848 UTC
c00554ff-60bb-4728-8309-df3cba61274d
2014-03-20 15:18:52.392 UTC
ab0cbf4f-b40d-476a-915d-f615bfdaeb97
2014-03-20 15:11:12.372 UTC
ca560582-fbca-4059-a5fe-c04ada19025b
2014-03-20 14:26:03.704 UTC
9d06e333-afbf-4524-80fb-8104d3d6d253
2014-03-23 16:41:12.644 UTC
26227e50-77e8-4974-b387-5f37d523e007
2014-03-20 14:35:48.132 UTC
1d71417c-7bdd-46dd-9d6d-fe841d830510
2014-03-20 15:02:39.151 UTC
663492bc-20d7-40ed-a8f7-94388e54b723
2014-03-20 14:51:44.41 UTC
6fe6403a-12b8-4bf3-9c94-5c13071e5f3e
2014-03-20 15:26:46.493 UTC
54c3cfdc-b815-4985-a5d5-763b74287d47
2014-03-20 15:24:01.882 UTC
51fabdbe-60ca-4101-b801-6e29a3c7f5ef
2014-03-20 14:55:01.974 UTC
Workflow35Sentinel00response_body00workflow_error_message0parse_job_statusstring0returnCode00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
returnCode
0
0
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2014-02-15 12:05:28.746 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeparse_job_statusstringworkflow_error_message
ae828645-01b2-4c96-bf4c-036da1c8a77e
2014-02-15 10:04:39.915 UTC
9ac7864c-a097-455b-a7de-21bb3861e3d8
2014-02-15 12:05:36.706 UTC
8e70e22b-c8c8-4945-bcdc-71f3d338bebd
2014-02-15 12:03:44.82 UTC
0a71ad70-ce80-4d0d-a26b-ff57d65b2f4b
2014-02-14 16:48:23.73 UTC
9ad76bc2-eb6d-4a56-9138-f5cbfcfd10e2
2014-02-14 16:47:29.544 UTC
fc1cde09-bda9-498c-929a-3bc39751bbd6
2014-02-15 11:59:45.334 UTC
Workflow6mgID_list00simple_traits0aminoacid_contentid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/simple-traits
text/csv
application/xml
String
false
false
false
false
false
id
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
5
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_aminoacid_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_simple_traitsstring0regex0data00header00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
data
0
0
header
0
0
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2014-03-20 15:32:15.158 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
strippedlist
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Union_2list21list11union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
list1
1
l('text/plain')
java.lang.String
true
list2
1
l('text/plain')
java.lang.String
true
union
1
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringSetUnion
UserNameHere
2014-03-20 17:30:28.456 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_simple_traits_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
split
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeaminoacid_contentidmerge_aminoacid_datastringlistremove_headers_simple_traitsstringremove_headers_simple_traitsregexRemove_String_DuplicatesstringlistString_List_Union_2list2String_List_Union_2list1merge_simple_traits_datastringlistSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexsimple_traits
260c33c7-a73e-49fe-a912-a758572d674b
2014-03-20 16:24:53.195 UTC
8bdf1774-17f3-4ed5-9378-4e711a57ce63
2014-03-20 15:52:23.118 UTC
02b5aed6-a610-447b-be62-31519df13e2d
2014-03-20 15:21:18.570 UTC
663492bc-20d7-40ed-a8f7-94388e54b723
2014-03-20 14:51:44.41 UTC
da9bf039-7ae5-48a5-9d18-c7b65c6c3229
2014-03-20 15:31:39.946 UTC
209d8560-f6b8-4a83-b2b0-4265af159d5e
2014-03-20 15:54:34.857 UTC
70b7e1e7-b721-4a9e-b7ab-f973641f634a
2014-03-23 16:40:06.426 UTC
e90a7a67-879d-4cfe-86d8-ed38cda1f781
2014-03-20 17:08:03.135 UTC
8443e8d7-f693-43d8-a052-6350829714dc
2014-03-20 14:27:04.950 UTC
28f3f714-474a-41f1-8a1b-ece92901e27c
2014-03-20 15:21:58.848 UTC
ca560582-fbca-4059-a5fe-c04ada19025b
2014-03-20 14:26:03.704 UTC
b4d72433-3ad8-4a5c-a373-fdf0e556513c
2014-03-20 16:30:22.697 UTC
54c3cfdc-b815-4985-a5d5-763b74287d47
2014-03-20 15:24:01.882 UTC
51fabdbe-60ca-4101-b801-6e29a3c7f5ef
2014-03-20 14:55:01.974 UTC
ab783f60-2dea-48f4-a485-2ca95ddd0894
2014-03-21 15:26:45.396 UTC
a8c7c7be-51eb-4e30-8dbb-daf7a1323f7c
2014-03-20 14:50:48.877 UTC
1d71417c-7bdd-46dd-9d6d-fe841d830510
2014-03-20 15:02:39.151 UTC
b757149c-4de5-4efe-a617-9519a4dba905
2014-03-20 14:23:12.259 UTC
76967133-24ad-4b80-a60f-fbe03a866235
2014-03-24 17:50:37.925 UTC
75496257-0149-4ebd-81fb-e87627dd0a4e
2014-03-20 15:06:52.151 UTC
26227e50-77e8-4974-b387-5f37d523e007
2014-03-20 14:35:48.132 UTC
faaf079a-a799-471f-a608-67876a0aa7e1
2014-03-20 16:11:27.67 UTC
084de299-65fd-4e59-a94e-d5cb8991c979
2014-03-20 16:00:05.407 UTC
779960a0-6038-4eeb-b931-b4475ccb47c2
2014-03-20 16:31:47.431 UTC
711934ae-6b8c-493b-a095-ed559b1a21a6
2014-03-20 16:05:26.581 UTC
3578c284-385c-44d6-92ab-2d6d060628bd
2014-03-20 17:30:32.719 UTC
4168c5a4-77ae-42cc-a85b-b7136903dcea
2014-03-20 14:50:12.598 UTC
3d5ac55c-192a-40b6-b165-b8eb10f68a9d
2014-03-20 14:32:17.935 UTC
afc23b88-6254-45b4-ac35-f05145050463
2014-03-20 15:32:38.604 UTC
ab0cbf4f-b40d-476a-915d-f615bfdaeb97
2014-03-20 15:11:12.372 UTC
eac39443-bd8b-43c2-8911-2e4ed34bb3b9
2014-03-20 15:22:43.394 UTC
c00554ff-60bb-4728-8309-df3cba61274d
2014-03-20 15:18:52.392 UTC
9c038971-5ba5-439a-a4fa-ee3f393aa5f7
2014-03-20 16:20:56.834 UTC
01e312ba-1ab7-4d5e-9d6e-f474671e972a
2014-03-20 15:09:51.709 UTC
6fe6403a-12b8-4bf3-9c94-5c13071e5f3e
2014-03-20 15:26:46.493 UTC
Microbial_Metagenomimg_list00
A list of metagenomes exported from the Metagenomic Traits Database in CSV format. Visit http://mb3is.megx.net/mg-traits/samples to compile the list of metagnemoes you want to analyze.
2014-08-20 17:17:58.982 UTC
"Id","Sample Name","Sample Environment"
"mg660-JCVI_SMPL_1103283000008","GS002","Coastal"
"mg653-JCVI_SMPL_1103283000001","GS000a","Open Ocean"
"mg657-JCVI_SMPL_1103283000005","GS001a","Open Ocean"
"mg733-JCVI_SMPL_GS112a","GS112a","Open Ocean"
2014-03-25 07:37:58.510 UTC
phyloMantel0
Mantel test against phylogenetic distance matrix (controlling for functional response)
2014-03-27 12:59:07.131 UTC
funcMantel0
Mantel test against functional distance matrix (controlling for phylogenetic response)
2014-03-27 13:00:59.790 UTC
summary_traits0
A table with all the traits used in this statistical analysis.
2014-08-20 17:20:21.881 UTC
pcaLog0
Log file from the PCA analysis
2014-03-27 13:01:19.76 UTC
traits_biplot0
PCA biplot.
2014-08-20 17:20:59.508 UTC
bivariatePlot0
All against all trait realtionships.
2014-08-20 17:18:49.750 UTC
traitsPCAPlot0
Plot of the PCA of all traits.
2014-08-20 17:19:28.717 UTC
funcNMDSLog0
Log file from the functional NMDS
2014-03-27 14:26:58.570 UTC
taxoNMDSLog0
Log file from the functional NMDS
2014-03-27 14:29:20.162 UTC
funcNMDSTxt0
Data used for the functional NMDS plot
2014-03-27 14:26:37.541 UTC
taxoNMDSPlot0
Plot of the taxonomic NMDS
2014-03-27 14:27:19.296 UTC
funcNMDSPlot0
Plot of the functional NMDS
2014-03-27 13:06:20.599 UTC
taxoNMDStxt0
Data used for the taxonomic NMDS plot
2014-03-27 14:28:28.267 UTC
aa_content0
Aminco Acid content ot the metagenomes.
2014-08-20 17:22:31.716 UTC
codon_usage0
Codon Usage data of the metagenomes.
2014-08-20 17:22:58.839 UTC
di_nucleotide_odds_ratio0
Di-nucleotide odds-ration data of the metagenomes.
2014-08-20 17:23:19.535 UTC
functional_content0
Functional content data of the metagenomes.
2014-08-20 17:23:51.908 UTC
simple_traits0
Simple triats data of the metagenomes.
2014-08-20 17:24:15.297 UTC
taxonomic_content0
Taxonomic content of the metagenomes.
2014-08-20 17:25:41.385 UTC
retrieve_traitsmg_list0dinuc00functional_content00aa00simple_traits00taxonomic_content00codon00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMetagenomic_Traits_Sdinuc0func0aa0traits0phylo0codon0phyloMantel00funcMantel00summary_traits00pcaLog00traitsBiplot00bivariatePlot00traitsPcaPlot00funcNMDSLog00phyloNMDSLog00funcNmdsTxt00phyloNmdsPlot00funcNmdsPlot00phyloNmdsTxt00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeretrieve_traitsmg_listMetagenomic_Traits_SdinucMetagenomic_Traits_SfuncMetagenomic_Traits_SaaMetagenomic_Traits_StraitsMetagenomic_Traits_SphyloMetagenomic_Traits_ScodonphyloMantelfuncMantelsummary_traitspcaLogtraits_biplotbivariatePlottraitsPCAPlotfuncNMDSLogtaxoNMDSLogfuncNMDSTxttaxoNMDSPlotfuncNMDSPlottaxoNMDStxtaa_contentcodon_usagedi_nucleotide_odds_ratiofunctional_contentsimple_traitstaxonomic_content
ddea614b-669f-4558-9856-477723b87000
2014-03-27 14:29:34.524 UTC
dcbd86e6-1b32-4770-a670-988afca54042
2014-04-01 09:36:26.600 UTC
99843828-384e-47c9-8d19-04728dc49971
2014-03-25 07:32:17.200 UTC
f84c0f64-8762-4f00-b492-29f59d82945a
2014-03-25 18:02:16.149 UTC
5d01d787-fb26-4525-ae12-c5691c251367
2014-03-27 12:42:04.69 UTC
8d104bef-9b0e-4992-8459-70654cea2908
2014-03-21 15:33:43.968 UTC
5a51a412-cc64-4af4-b7d7-25b4fb40b866
2014-03-27 14:40:52.644 UTC
241d76ba-79e8-4ee2-9ee9-e3810f3c8df2
2014-03-23 12:09:33.107 UTC
2e2beacb-9bc8-4bf1-8fd1-4ac33bf85b6c
2014-03-25 17:48:59.663 UTC
f30ff904-a3af-4004-ba2c-437d0e722cb1
2014-03-25 21:41:00.573 UTC
d5807313-705f-4ff5-b1d2-fce2fa53976e
2014-03-25 17:56:25.480 UTC
1eb83722-90fd-4e77-850a-ef80d89dad63
2014-03-25 18:40:58.440 UTC
1403e40f-b811-4e7d-9d2d-823f2844b96b
2014-08-20 17:20:03.527 UTC
a711a0b1-bd59-4740-acec-69a6edf7fbe5
2014-03-25 17:20:03.547 UTC
4ba1f2ce-2533-4103-baaf-f8c70825a6d8
2014-03-24 18:05:10.847 UTC
5f3e98a6-34bc-41c4-831c-42e4f49f8275
2014-03-23 17:33:22.514 UTC
fd66e45c-0478-4680-ae7a-1f801644191a
2014-08-20 18:04:47.812 UTC
0c81d369-47f0-4d0e-9c5d-7a809e74c548
2014-03-25 21:54:24.993 UTC
7607cf9a-77c6-4408-bdfd-acf39e6aff1b
2014-03-25 17:14:12.487 UTC
926750c7-6806-4da2-85fe-f1759685b484
2014-08-20 17:23:46.828 UTC
18d781dc-8c40-4f8a-868e-15afa4584f64
2014-03-20 17:42:00.960 UTC
e1e39db3-38a3-468b-87bf-ea99fe07c8bb
2014-03-24 17:18:51.874 UTC
57db6ffe-aa94-477b-97eb-de9467ad9538
2014-03-27 13:06:17.291 UTC
dedd5a07-47b8-4e4c-a22d-138bc3dc9015
2014-11-10 15:02:37.964 UTC
dd244356-3f13-406f-8ec9-f42ea7683748
2014-03-24 17:51:18.53 UTC
292745d5-ebe0-4e4d-a167-fada73583aee
2014-03-25 18:07:17.349 UTC
7f4cf4d7-3e67-4348-8207-9bf7017f6446
2014-11-10 16:34:32.980 UTC
e220da8b-a27d-499a-899a-d4e3ed38c2cb
2014-03-25 07:26:38.616 UTC
eefd01e6-f2d8-4ad4-ad02-c42c11e5dd69
2014-03-23 16:41:51.743 UTC
e3ec9b0a-89b6-4e37-81b9-31024b4bcf66
2014-03-25 17:26:25.527 UTC
1e60157b-77f1-4e12-a7cd-67d7f1334e73
2014-08-20 17:19:25.357 UTC
2a071c0a-7270-4690-9f4a-f07ae566e6ad
2014-08-20 17:24:58.185 UTC
72541358-a74b-4d00-99a0-f0ae57bd2e24
2014-03-27 13:05:17.265 UTC
a78900f4-f0f6-41e2-a63a-17af8561124a
2014-04-01 08:52:24.114 UTC
59495c12-c1a1-420c-92ac-00b809ddba01
2014-03-25 21:21:20.431 UTC
855af35a-92bc-4d0c-bdf7-24daea1acfd1
2014-03-25 21:37:23.574 UTC
6b57302d-c512-43a7-a2e8-cf6b3d969972
2014-08-20 17:26:22.772 UTC
ccb2aa68-206f-4e11-acc5-e1f223cc33c9
2014-04-01 08:58:56.111 UTC
cf5d0edc-85e6-48ed-b095-ab7fe8eb5763
2014-03-25 07:38:15.476 UTC
7cd6c950-8be7-4b7e-9c50-084846ad8760
2014-03-20 18:08:13.821 UTC
30d3b473-7978-4f3d-8cb1-3fec73590836
2014-08-20 17:17:51.463 UTC
a0d14108-e0e5-4efb-81b5-9f0f956a3da0
2014-08-20 17:24:11.222 UTC
a1335822-d748-4559-a04c-1a11bcaade31
2014-03-25 18:50:19.785 UTC
92035dc5-df08-4152-a8ca-876332485761
2014-08-20 17:22:27.58 UTC
559be13f-3473-4bae-9e39-c23b6b4143ea
2014-08-20 18:04:33.761 UTC
f549af85-0ecf-423d-a9ba-8068daab2975
2014-03-24 19:10:08.323 UTC
317b76f2-1e99-40d8-bbb5-c4dcb0652107
2014-03-27 15:05:20.612 UTC
This workflow retrieves the following microbial metagenomic traits from the Microbial Metagenomic Trait Database:
-GC content
-Variance of GC content
-Dinucleotides
-Number of rRNA
-Codon usage
-Amino acid composition
-Acidic to basic amino acids ratio
-% of Transcriptional factors
-% of classified reads
-Functional content
-Functional diversity
-Taxonomic content
-Taxonomic diversity
After the retrieval performs the ecological analyses described in Barberan et al. 2012 (http://dx.doi.org/10.1111/j.1365-294X.2011.05383.x)
Please read: https://wiki.biovel.eu/display/doc/Metagenomic+Workflows
2014-08-20 18:04:39.472 UTC
bd9faf4f-9edd-4cf4-9013-46aebdeb4bda
2014-10-27 15:20:40.391 UTC
4faeea64-a26f-4af5-a43e-78a3f17e20d4
2014-03-25 07:34:43.888 UTC
a7af0344-f311-4d48-8bc4-a2e04f49d8cb
2014-03-25 20:17:03.848 UTC
2c86c85e-17d0-4859-b9e3-e5a9f1712f20
2014-11-10 15:30:04.763 UTC
9eb76bf9-d8b3-4d27-a759-79432104e3f6
2014-03-25 18:32:38.640 UTC
8681003e-f451-4bf9-b7c0-67eaeb85e3fc
2014-08-20 18:06:27.29 UTC
Antonio Fernandez-Guerra, Pelin Yilmaz and Renzo Kottmann
2014-03-27 12:41:40.497 UTC
Microbial Metagenomic Trait Statistical Analysis Workflow
2014-08-20 18:04:51.9 UTC
Workflow6mgID_list00di_nucleotide_odds_ratio0di_nucleotide_odds_ratioid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/di-nucleotide-odds-ratio
text/csv
application/xml
String
false
false
false
false
false
id
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
5
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_dinuc_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_dinucstring0regex0data00header00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
data
0
0
header
0
0
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2014-03-20 15:32:15.158 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
strippedlist
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Union_2list21list11union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
list1
1
l('text/plain')
java.lang.String
true
list2
1
l('text/plain')
java.lang.String
true
union
1
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringSetUnion
UserNameHere
2014-03-20 17:32:54.721 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_dinuc_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
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seperator
0
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0
workflow
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
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1.0
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0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
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1.0
1000
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
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1
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1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokedi_nucleotide_odds_ratioidmerge_dinuc_datastringlistremove_headers_dinucstringremove_headers_dinucregexRemove_String_DuplicatesstringlistString_List_Union_2list2String_List_Union_2list1merge_dinuc_data_2stringlistSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexdi_nucleotide_odds_ratio
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2014-03-20 15:09:51.709 UTC
b757149c-4de5-4efe-a617-9519a4dba905
2014-03-20 14:23:12.259 UTC
4c9bb824-ccd6-4473-b59f-b86ab9a5eb94
2014-03-20 16:37:18.69 UTC
711934ae-6b8c-493b-a095-ed559b1a21a6
2014-03-20 16:05:26.581 UTC
8443e8d7-f693-43d8-a052-6350829714dc
2014-03-20 14:27:04.950 UTC
02b5aed6-a610-447b-be62-31519df13e2d
2014-03-20 15:21:18.570 UTC
51fabdbe-60ca-4101-b801-6e29a3c7f5ef
2014-03-20 14:55:01.974 UTC
663492bc-20d7-40ed-a8f7-94388e54b723
2014-03-20 14:51:44.41 UTC
e8f78f91-306e-4194-b31e-1aa5d566800c
2014-03-21 15:30:54.270 UTC
e94145c2-522e-447d-a586-7a1c93ef2cbb
2014-03-20 17:32:56.747 UTC
8bdf1774-17f3-4ed5-9378-4e711a57ce63
2014-03-20 15:52:23.118 UTC
1d71417c-7bdd-46dd-9d6d-fe841d830510
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8dac744d-1af5-4310-8555-3657375968e8
2014-03-24 17:50:10.94 UTC
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2014-03-20 14:50:12.598 UTC
6fe6403a-12b8-4bf3-9c94-5c13071e5f3e
2014-03-20 15:26:46.493 UTC
084de299-65fd-4e59-a94e-d5cb8991c979
2014-03-20 16:00:05.407 UTC
afc23b88-6254-45b4-ac35-f05145050463
2014-03-20 15:32:38.604 UTC
9c038971-5ba5-439a-a4fa-ee3f393aa5f7
2014-03-20 16:20:56.834 UTC
da9bf039-7ae5-48a5-9d18-c7b65c6c3229
2014-03-20 15:31:39.946 UTC
15064f5a-7370-49d8-8419-85614cc90fba
2014-03-23 16:41:45.470 UTC
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2014-03-20 15:22:43.394 UTC
26227e50-77e8-4974-b387-5f37d523e007
2014-03-20 14:35:48.132 UTC
28f3f714-474a-41f1-8a1b-ece92901e27c
2014-03-20 15:21:58.848 UTC
209d8560-f6b8-4a83-b2b0-4265af159d5e
2014-03-20 15:54:34.857 UTC
c00554ff-60bb-4728-8309-df3cba61274d
2014-03-20 15:18:52.392 UTC
a8c7c7be-51eb-4e30-8dbb-daf7a1323f7c
2014-03-20 14:50:48.877 UTC
faaf079a-a799-471f-a608-67876a0aa7e1
2014-03-20 16:11:27.67 UTC
ca560582-fbca-4059-a5fe-c04ada19025b
2014-03-20 14:26:03.704 UTC
75496257-0149-4ebd-81fb-e87627dd0a4e
2014-03-20 15:06:52.151 UTC
3d5ac55c-192a-40b6-b165-b8eb10f68a9d
2014-03-20 14:32:17.935 UTC
ab0cbf4f-b40d-476a-915d-f615bfdaeb97
2014-03-20 15:11:12.372 UTC
54c3cfdc-b815-4985-a5d5-763b74287d47
2014-03-20 15:24:01.882 UTC
260c33c7-a73e-49fe-a912-a758572d674b
2014-03-20 16:24:53.195 UTC
Workflow30Sentinel00response_body00mgID0parse_job_statusstring0public_label00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
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public_label
0
0
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2014-02-15 16:21:11.599 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
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0
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeparse_job_statusstringmgID
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2014-02-15 16:17:14.831 UTC
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2014-02-15 16:21:26.56 UTC
a194d37f-2b6d-4b2b-92c0-da30884b718f
2014-02-14 16:45:35.897 UTC
a9482d67-2084-4748-b8cc-9a74a0123615
2014-02-14 16:47:16.261 UTC
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2014-02-14 16:46:06.809 UTC
4037619c-8ffd-4c6e-a154-d0970ce04bf3
2014-02-15 16:16:46.659 UTC
Workflow6mgID_list00taxonomic_content0taxonomic_contentid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity
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String
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1
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1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_taxonomic_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
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1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_aastring0regex0header00data00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
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data
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UserNameHere
2014-03-20 15:32:15.158 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
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l('text/plain')
1
workflow
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1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Union_2list21list11union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
list1
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l('text/plain')
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workflow
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UserNameHere
2014-03-20 17:31:16.428 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_taxonomic_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
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l('text/plain')
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1
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\n
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1
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1000
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
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1.0
1000
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net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketaxonomic_contentidmerge_taxonomic_datastringlistremove_headers_aastringremove_headers_aaregexRemove_String_DuplicatesstringlistString_List_Union_2list2String_List_Union_2list1merge_taxonomic_data_2stringlistSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregextaxonomic_content
afc23b88-6254-45b4-ac35-f05145050463
2014-03-20 15:32:38.604 UTC
54c3cfdc-b815-4985-a5d5-763b74287d47
2014-03-20 15:24:01.882 UTC
9c038971-5ba5-439a-a4fa-ee3f393aa5f7
2014-03-20 16:20:56.834 UTC
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