Microbial_Metagenomimetagenome_data_url00 https://colab.mpi-bremen.de/micro-b3/svn/taverna-workflows/mg-traits/trunk/example-data/test_11K_reads.fasta 2014-08-21 09:59:03.40 UTC Add a link (URL) to a fasta file of your metagnome nucleotide sequences. The workflow expects a pre-processed fasta file of reads or contigs without replicated sequences. File can be gzipped. 2014-08-21 09:58:57.838 UTC environment00 marine benthic biome 2014-08-12 12:55:55.351 UTC We strongly encorauge the use of environmental ontologies (http://environmentontology.org/) Please find the biome terms here: http://ols.wordvis.com/ont=ENVO:q=biome 2014-08-12 13:03:04.324 UTC sample_label00 A label for the sample. 2014-08-12 13:04:42.91 UTC test_label 2014-02-15 12:00:52.175 UTC metagenomes_list00 "Id","Sample Name","Sample Environment" "mg660-JCVI_SMPL_1103283000008","GS002","Coastal" "mg653-JCVI_SMPL_1103283000001","GS000a","Open Ocean" "mg657-JCVI_SMPL_1103283000005","GS001a","Open Ocean" "mg733-JCVI_SMPL_GS112a","GS112a","Open Ocean" "mg723-JCVI_SMPL_GS117a","GS117a","Coastal sample" "mg719-JCVI_SMPL_GS113","GS113","Open Ocean" "mg720-JCVI_SMPL_GS114","GS114","Open Ocean" "mg751-JCVI_SMPL_GS115","GS115","Open Ocean" "mg670-JCVI_SMPL_1103283000018","GS012","Estuary" "mg750-JCVI_SMPL_GS110a","GS110a","Open Ocean" 2014-11-10 15:02:59.539 UTC A list or file of metagenomes present in the Microbial Metagenomic Trait Database (http://mb3is.megx.net/mg-traits) Select the metagenomes and downlad the file list from http://blast2.mpi-bremen.de/mg-traits/samples To run the workflow, at least select more than 10 metagenomes. 2014-11-10 15:03:21.657 UTC sample_description00 describing text 2014-08-21 09:46:46.819 UTC Text describing the environmental sample 2014-08-21 09:46:37.578 UTC sample_name00 env_sample_name 2014-08-21 09:46:20.48 UTC A name of the environmental sample. 2014-08-21 09:46:12.530 UTC oauth_access_token00 The OAuth access token from your megx.net account at http://mb3is.megx.net/apps (for details visit https://wiki.biovel.eu/display/doc/Microbial+Metagenomic+Trait+Calculation+and+Statistical+Analysis) 2014-08-21 09:55:06.767 UTC oauth_access_token_secret00 The OAuth access token secret from your megx.net account at http://mb3is.megx.net/apps (for details visit https://wiki.biovel.eu/display/doc/Microbial+Metagenomic+Trait+Calculation+and+Statistical+Analysis) 2014-08-21 09:55:29.485 UTC oauth_app_id00 The OAuth app id from your megx.net account at http://mb3is.megx.net/apps (for details visit https://wiki.biovel.eu/display/doc/Microbial+Metagenomic+Trait+Calculation+and+Statistical+Analysis) 2014-08-21 09:54:15.507 UTC oauth_app_secret00 The OAuth app secret from your megx.net account at http://mb3is.megx.net/apps (for details visit https://wiki.biovel.eu/display/doc/Microbial+Metagenomic+Trait+Calculation+and+Statistical+Analysis) 2014-08-21 09:54:00.683 UTC job_address1workfow_error_message3mgID3poll_status1start_job_response_body0job_redirction_port0funcMantel3phyloMantel3bivariatePlot3traitsPCAPlot3traits_biplot3summary_traits3pcaLog3taxonamicNMDSPlot3functionalNMDSPlot3functionalNMDStext3functionalNMDSlog3taxonomicNMDSlog3taxonomicNMDStext3amino_acid_content3codon_usage3di_nucleotide_odds_ratio3functional_content3simple_traits3taxonomic_content3pol_job_actual_url1poll_sample_label1create_url_for_launch_jobsample_label0url0sample_description0sample_name0environment0url_query_string00 Concatenates input data as URL query string for subsequent usage in http requests. 2014-08-20 09:50:20.512 UTC net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity sample_label 0 'text/plain' java.lang.String true environment 0 'text/plain' java.lang.String true url 0 text/plain java.lang.String true sample_description 0 text/plain java.lang.String true sample_name 0 text/plain java.lang.String true url_query_string 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2014-08-20 09:46:08.282 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_match_group_numbervalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeLocation_header_value_regexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Location: (.*) net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_job_addressgroup0regex0stringlist1filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true regex 0 'text/plain' java.lang.String true group 0 'text/plain' java.lang.String true filteredlist 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_public_idstring0last00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity string 0 text/plain java.lang.String true last 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokepoll_for_job_statussample-label0redirection00responseBody00status00actualURL00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/jobs/{sample-label} text/csv application/xml String true true true true true sample-label java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>status</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + status.equals("202"); if ("true".matches(loop)) { Thread.sleep(90000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 3000 12000 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeevaluate_job_statuscondition0fail_flags11pass_flags11 Checks if job failed or succeeded. 2014-08-20 09:55:48.110 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity condition 0 text/plain java.lang.String true pass_flags 1 1 fail_flags 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesuccessfulJobSentinel0response_body0mgID00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefailedJobSentinel0response_body0workflow_error_message00 Handles a failed job submission. 2014-08-20 09:52:25.636 UTC net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeparse_job_statusstring0returnCode00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true returnCode 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2014-11-10 14:21:30.88 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST___OAuth_1_0a_ServiceinputBody0oauth_access_token0oauth_access_token_secret0oauth_client_secret0oauth_client_id0responseHeaders11redirection00responseBody00uk.ac.soton.mib104.t2.activitiesoauth-activity0.0.3uk.ac.soton.mib104.t2.activities.oauth.OAuth10aRESTActivity POST http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/jobs text/csv application/x-www-form-urlencoded String true true true true false oauth_scope java.lang.String oauth_client_id java.lang.String oauth_access_token_secret java.lang.String oauth_client_secret java.lang.String oauth_access_token java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeconcatenate_DB_and_crunched_mgIDsmg_list0mg_jobid0full_mg_list00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity mg_list 0 'text/plain' java.lang.String true mg_jobid 0 'text/plain' java.lang.String true full_mg_list 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2014-08-21 08:49:18.184 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMicrobial_Metagenomimg_list0funcMantel00phyloMantel00bivariatePlot00traitsPCAPlot00traits_biplot00summary_traits00pcaLog00taxoNMDSPlot00funcNMDSPlot00funcNMDSTxt00funcNMDSLog00taxoNMDSLog00taxoNMDStxt00aa_content00codon_usage00di_nucleotide_odds_ratio00functional_content00simple_traits00taxonomic_content00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecreate_url_for_launch_jobsample_labelsample_labelcreate_url_for_launch_joburlmetagenome_data_urlcreate_url_for_launch_jobsample_descriptionsample_descriptioncreate_url_for_launch_jobsample_namesample_namecreate_url_for_launch_jobenvironmentenvironmentget_job_addressgroupregex_match_group_numbervalueget_job_addressregexLocation_header_value_regexvalueget_job_addressstringlistREST___OAuth_1_0a_ServiceresponseHeadersget_public_idstringget_job_addressfilteredlistpoll_for_job_statussample-labelget_public_idlastevaluate_job_statusconditionparse_job_statusreturnCodesuccessfulJobSentinelevaluate_job_statuspass_flagssuccessfulJobresponse_bodypoll_for_job_statusresponseBodyfailedJobSentinelevaluate_job_statusfail_flagsfailedJobresponse_bodypoll_for_job_statusresponseBodyparse_job_statusstringpoll_for_job_statusresponseBodyREST___OAuth_1_0a_ServiceinputBodycreate_url_for_launch_joburl_query_stringREST___OAuth_1_0a_Serviceoauth_access_tokenoauth_access_tokenREST___OAuth_1_0a_Serviceoauth_access_token_secretoauth_access_token_secretREST___OAuth_1_0a_Serviceoauth_client_secretoauth_app_secretREST___OAuth_1_0a_Serviceoauth_client_idoauth_app_idconcatenate_DB_and_crunched_mgIDsmg_listmetagenomes_listconcatenate_DB_and_crunched_mgIDsmg_jobidsuccessfulJobmgIDMicrobial_Metagenomimg_listconcatenate_DB_and_crunched_mgIDsfull_mg_listjob_addresspoll_for_job_statusredirectionworkfow_error_messagefailedJobworkflow_error_messagemgIDsuccessfulJobmgIDpoll_statuspoll_for_job_statusstatusstart_job_response_bodyREST___OAuth_1_0a_ServiceresponseBodyjob_redirction_portREST___OAuth_1_0a_ServiceredirectionfuncMantelMicrobial_MetagenomifuncMantelphyloMantelMicrobial_MetagenomiphyloMantelbivariatePlotMicrobial_MetagenomibivariatePlottraitsPCAPlotMicrobial_MetagenomitraitsPCAPlottraits_biplotMicrobial_Metagenomitraits_biplotsummary_traitsMicrobial_Metagenomisummary_traitspcaLogMicrobial_MetagenomipcaLogtaxonamicNMDSPlotMicrobial_MetagenomitaxoNMDSPlotfunctionalNMDSPlotMicrobial_MetagenomifuncNMDSPlotfunctionalNMDStextMicrobial_MetagenomifuncNMDSTxtfunctionalNMDSlogMicrobial_MetagenomifuncNMDSLogtaxonomicNMDSlogMicrobial_MetagenomitaxoNMDSLogtaxonomicNMDStextMicrobial_MetagenomitaxoNMDStxtamino_acid_contentMicrobial_Metagenomiaa_contentcodon_usageMicrobial_Metagenomicodon_usagedi_nucleotide_odds_ratioMicrobial_Metagenomidi_nucleotide_odds_ratiofunctional_contentMicrobial_Metagenomifunctional_contentsimple_traitsMicrobial_Metagenomisimple_traitstaxonomic_contentMicrobial_Metagenomitaxonomic_contentpol_job_actual_urlpoll_for_job_statusactualURLpoll_sample_labelget_public_idlast 618d89fe-0f7d-4624-b4e4-8aa3e335ac4c 2014-02-14 07:34:38.690 UTC a410e773-36df-4158-859b-29164f7ec381 2014-02-13 15:53:56.945 UTC 8b2e49b4-a297-46e3-8744-1099a30ef753 2014-02-13 16:40:36.342 UTC 6fc914ce-b184-4f4b-a4a1-401e91c09569 2014-08-20 10:30:21.252 UTC 971d97f2-5142-4486-ae2c-941b8ef5b371 2014-11-10 13:44:31.30 UTC dea8d100-87e1-40e0-bf79-4ce7185fb078 2014-02-13 13:26:04.215 UTC f6e9765b-0911-4fb0-85e0-936c60e5fc56 2014-02-13 16:20:43.961 UTC 2af9469b-1ae5-4f57-bf62-62558c0513c0 2014-08-20 18:06:25.877 UTC b6d8f87f-2b3f-4044-b058-576db15dd50a 2014-02-13 15:54:50.360 UTC This workflow calculates the microbial traits of your metagenome and retrieves additional traits data from the Microbial Metagenomic Trait Database http://mb3is.megx.net/mg-traits. The list of traits: - GC content - Variance of GC content - Dinucleotides - Number of rRNA - Codon usage - Amino acid composition - Acidic to basic amino acids ratio - % of Transcriptional factors - % of classified reads - Functional content - Functional diversity - Taxonomic content - Taxonomic diversity As described in Barberan et al. 2012 (http://dx.doi.org/10.1111/j.1365-294X.2011.05383.x) Furhter documentation: https://wiki.biovel.eu/display/doc/Metagenomic+Workflows 2014-10-03 19:03:59.974 UTC Microbial Metagenomic Trait Calculation and Statistical Analysis Workflow 2014-08-20 18:05:31.821 UTC d37c4f76-a388-416a-b2a5-6168cd311fdf 2014-02-15 19:36:58.346 UTC 28f5ed39-d451-4ee0-8da4-ed55cdb937c5 2014-11-10 16:50:59.766 UTC 5fb374bc-14dc-4927-84c0-11d846654dff 2014-02-15 16:23:42.983 UTC f3ee35c0-ce5d-4691-938f-c8ea362c5fbf 2014-02-10 15:31:48.620 UTC 91b6e278-5d2e-4da7-b023-e33bf545ab08 2014-02-15 11:49:56.73 UTC 0bd00629-6ea5-4d49-81b2-a8396ddc484a 2014-08-21 09:02:16.521 UTC f139c4cd-a56a-4719-86f2-7bb97a58d51d 2014-08-21 09:48:37.770 UTC fcf6d77f-c289-4c89-8821-a9e0648a727d 2014-02-10 18:02:24.18 UTC 6a12f9e0-ee2c-4f92-95fc-1fa589c85042 2014-10-03 19:04:05.956 UTC 64798a55-b2de-4a16-b825-8a6959143f00 2014-08-22 10:27:30.484 UTC f88e3e36-ecf8-4c7a-a6f7-e54df8ac5204 2014-08-12 13:30:06.383 UTC c80d1845-ba96-4bdc-b028-de6463468daf 2014-02-13 16:42:29.673 UTC 1bbca299-53a5-48a7-ac53-5a4b77999d9c 2014-02-13 15:59:49.313 UTC 69243ffe-8c22-479f-981f-fc94a1d8e69a 2014-02-13 16:47:55.402 UTC 081a89d1-016b-4f77-8c22-98a84658087a 2014-08-12 13:34:01.122 UTC 259f626b-06a5-45ee-b545-c2f0621534d4 2014-02-15 10:06:20.974 UTC d2b8ca0a-b27e-4fa2-980d-8b176076f6e9 2014-03-20 09:11:26.403 UTC 5d34f162-3edd-4cb6-b813-da86debf394c 2014-08-21 09:59:06.519 UTC Antonio Fernandez-Guerra Renzo Kottmann Pelin Yilmaz 2014-10-03 18:59:54.920 UTC 2b35b8b9-869b-42e9-98ee-2ca43f855eca 2014-08-21 14:05:19.177 UTC 63215e2b-cc3f-4fb1-bed4-7341a74d0ac7 2014-02-13 15:48:51.97 UTC 95977022-0578-4ccb-9f50-e608359fbf97 2014-11-10 15:03:18.874 UTC e1abd29a-00f6-495d-ba6a-333e82df3767 2014-08-12 13:07:44.576 UTC 3a0781dc-22ba-42f4-a163-eaeadd80773c 2014-08-20 10:02:42.953 UTC 579aff3f-10af-4194-be82-9e3a21d2d960 2014-08-12 13:38:57.167 UTC a2eb6d00-27b8-46d0-ac8d-eaf859b15cf9 2014-02-15 19:32:40.865 UTC 763ea0fe-a667-4387-bc5b-c62708ed0362 2014-02-10 17:41:30.433 UTC 4ecbd86e-5f59-44ed-974a-74250cbe59b1 2014-08-19 16:22:01.14 UTC a9ef8c1a-78e9-4c22-9887-b4a22deb96e6 2014-02-13 16:41:36.647 UTC ab3820b8-ce15-4bc2-b416-988dd94e048d 2014-02-15 12:06:01.294 UTC 5e82a5a6-4594-4e59-8ce8-5e3160d4a425 2014-03-19 17:24:52.500 UTC a89df5ef-97da-4876-91df-4d6a2f89ca5d 2014-02-13 16:00:18.337 UTC ffb6b26b-575e-4705-9ef7-0d44451bae7b 2014-08-21 08:49:33.875 UTC ca4029a3-5313-4ee6-8617-21f9be534404 2014-02-13 16:28:24.770 UTC bcf4fafb-afcb-436d-8606-3ee3fd5cb42d 2014-02-14 16:44:45.550 UTC fc84e292-5add-4a96-a88e-091340c9afe7 2014-02-15 11:57:17.210 UTC 61af4163-f9d7-4cf3-9b00-764bc44ab71a 2014-02-10 15:19:08.592 UTC 0d4a624f-e738-4177-ae19-0cbbf039cf16 2014-10-27 15:21:17.277 UTC 5ffd4676-3e1f-4b79-9803-cd43756590a2 2014-02-14 16:42:04.36 UTC fdb09b6b-f948-4c51-8651-661ab875b402 2014-08-21 09:56:07.360 UTC 84f5e123-911f-4509-8d0c-a470972232b4 2014-02-10 17:37:46.691 UTC 9878c06e-07b4-40d0-9e86-06a628da835e 2014-02-13 16:18:35.293 UTC 05d06988-e14f-4b29-ae8c-c7db3e1d1284 2014-08-19 16:28:36.100 UTC 06d25590-a212-4880-9708-ef88a9610381 2014-02-15 10:27:57.517 UTC c360f146-ad88-4abc-abd6-fae893a93bfd 2014-02-10 17:38:27.875 UTC 6b636c62-42fa-45c9-bae1-59520d31e8a0 2014-02-10 15:25:02.124 UTC 3bbd29a1-6840-418e-9440-893092a97dc6 2014-11-10 14:00:14.800 UTC 8ed6a173-d965-47fe-a394-130abe3f9632 2014-08-12 13:17:03.391 UTC a731d33a-85c0-4a2a-9c35-9e3fee79ec4a 2014-02-13 15:50:39.768 UTC a53be432-1973-41f1-909e-2ae4e14f4f97 2014-08-20 18:05:43.863 UTC 1d676945-9955-4deb-ac48-60e121d0a204 2014-11-10 16:35:40.35 UTC e14c321d-b5e4-46cd-b532-118beb26148f 2014-02-10 17:36:59.508 UTC 080e6563-c640-4763-a2f7-8577b8a35c24 2014-02-13 15:56:52.829 UTC 684ccc68-ad46-4a99-8743-988e1b4db523 2014-08-21 13:25:25.369 UTC 66cb3808-6123-46ef-bec5-073d792fda32 2014-02-13 16:36:22.134 UTC 5314c4f0-2f22-4b08-8d96-f2e996b56c04 2014-02-15 12:00:54.174 UTC ae5aaba5-41d4-4c93-a1aa-422a9025cecf 2014-08-21 13:31:22.790 UTC 09089235-545f-4a06-b0a5-c3c897bfcb5b 2014-02-10 18:01:26.956 UTC d586b0c2-fe53-456e-96b3-4b1c0a6254e8 2014-08-12 13:10:41.517 UTC bd8fa6db-a9f4-4e91-8312-6c04c1e23fb5 2014-11-10 15:03:36.766 UTC 3e7496f2-a2c3-4394-b97f-d3311b6740a9 2014-08-20 18:54:11.926 UTC 6d931464-9713-4cd6-8e9d-27ade6390680 2014-02-15 12:03:53.335 UTC 99ede279-394e-4a2b-bc83-598378ab10ea 2014-02-10 18:03:10.642 UTC c824801d-f53e-44bd-8f7c-a39e9e5e1ea1 2014-08-20 09:50:36.356 UTC 50a99557-98ff-4165-919a-54aac0549c45 2014-11-10 15:30:15.242 UTC 3874a6ef-2c45-46cf-8682-ab7f162e546e 2014-02-15 10:25:03.613 UTC 35f158ea-a987-4637-8e97-ad0ec760c728 2014-02-10 17:38:04.184 UTC a55f863f-92ff-44b5-a62a-4e4a19686a2a 2014-02-15 12:00:35.882 UTC 4d4b812d-d702-4961-aca1-57092387364a 2014-11-10 15:02:45.135 UTC 95ae73d5-0576-4eed-b112-fd3166610ed4 2014-02-13 17:01:34.32 UTC 63cad0f1-a9c9-4ad9-aac4-fde11c35e2b6 2014-11-10 14:21:36.131 UTC 28506505-d7c1-4113-b504-5d8da6d82f46 2014-03-19 17:27:24.939 UTC c675b8e9-144c-44f1-ba56-8250671cbc53 2014-02-15 10:03:36.236 UTC 027d2b80-d858-4366-910a-0bf262b9cabd 2014-02-14 16:49:50.806 UTC Workflow6mgID_list00functional_content0functional_contentid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/functional-content text/csv application/xml String false false false false false id java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_functional_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_functionalstring0regex0data00header00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true data 0 0 header 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2014-03-20 15:32:15.158 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true strippedlist 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Union_2list21list11union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity list1 1 l('text/plain') java.lang.String true list2 1 l('text/plain') java.lang.String true union 1 1 workflow org.embl.ebi.escience.scuflworkers.java.StringSetUnion UserNameHere 2014-03-20 17:28:25.782 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_functional_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokefunctional_contentidSplit_string_into_string_list_by_regular_expressionsplitmerge_functional_datastringlistremove_headers_functionaldataremove_headers_functionalstringfunctional_contentresponseBodyremove_headers_functionalregexnew_line_sepvalueRemove_String_Duplicatesstringlistremove_headers_functionalheaderString_List_Union_2list2merge_functional_dataconcatenatedString_List_Union_2list1Remove_String_Duplicatesstrippedlistmerge_functional_data_2stringlistString_List_Union_2unionSplit_string_into_string_list_by_regular_expressionstringmgID_listSplit_string_into_string_list_by_regular_expressionregexnew_line_sepvaluefunctional_contentmerge_functional_data_2concatenated 4168c5a4-77ae-42cc-a85b-b7136903dcea 2014-03-20 14:50:12.598 UTC 4c151363-961c-4703-9f39-a4e1c4ee06de 2014-03-20 17:28:32.78 UTC 9c038971-5ba5-439a-a4fa-ee3f393aa5f7 2014-03-20 16:20:56.834 UTC 173d6527-51e8-454d-8408-27ab8f8cfe17 2014-03-20 16:47:33.803 UTC 260c33c7-a73e-49fe-a912-a758572d674b 2014-03-20 16:24:53.195 UTC 55ede42b-b48b-43a1-bf39-0a9639a837b4 2014-03-20 17:06:05.170 UTC 1a758b8a-8797-4dee-ae3d-ae32c63f5638 2014-03-21 15:26:23.707 UTC c00554ff-60bb-4728-8309-df3cba61274d 2014-03-20 15:18:52.392 UTC ca560582-fbca-4059-a5fe-c04ada19025b 2014-03-20 14:26:03.704 UTC afc23b88-6254-45b4-ac35-f05145050463 2014-03-20 15:32:38.604 UTC 8bdf1774-17f3-4ed5-9378-4e711a57ce63 2014-03-20 15:52:23.118 UTC 3d5ac55c-192a-40b6-b165-b8eb10f68a9d 2014-03-20 14:32:17.935 UTC 01e312ba-1ab7-4d5e-9d6e-f474671e972a 2014-03-20 15:09:51.709 UTC faaf079a-a799-471f-a608-67876a0aa7e1 2014-03-20 16:11:27.67 UTC 26227e50-77e8-4974-b387-5f37d523e007 2014-03-20 14:35:48.132 UTC ab0cbf4f-b40d-476a-915d-f615bfdaeb97 2014-03-20 15:11:12.372 UTC d487c404-d991-4409-8ee2-3d6b68d787e4 2014-03-20 16:38:46.698 UTC 987fc835-da18-45e8-a11e-cb6b115bb28b 2014-03-23 16:39:53.434 UTC eac39443-bd8b-43c2-8911-2e4ed34bb3b9 2014-03-20 15:22:43.394 UTC b757149c-4de5-4efe-a617-9519a4dba905 2014-03-20 14:23:12.259 UTC 8443e8d7-f693-43d8-a052-6350829714dc 2014-03-20 14:27:04.950 UTC b3ac0193-5dc7-462a-8cec-78bbed7d4793 2014-03-20 17:30:10.504 UTC 51fabdbe-60ca-4101-b801-6e29a3c7f5ef 2014-03-20 14:55:01.974 UTC 28f3f714-474a-41f1-8a1b-ece92901e27c 2014-03-20 15:21:58.848 UTC 084de299-65fd-4e59-a94e-d5cb8991c979 2014-03-20 16:00:05.407 UTC 75496257-0149-4ebd-81fb-e87627dd0a4e 2014-03-20 15:06:52.151 UTC a8c7c7be-51eb-4e30-8dbb-daf7a1323f7c 2014-03-20 14:50:48.877 UTC 02b5aed6-a610-447b-be62-31519df13e2d 2014-03-20 15:21:18.570 UTC 1d71417c-7bdd-46dd-9d6d-fe841d830510 2014-03-20 15:02:39.151 UTC 663492bc-20d7-40ed-a8f7-94388e54b723 2014-03-20 14:51:44.41 UTC da9bf039-7ae5-48a5-9d18-c7b65c6c3229 2014-03-20 15:31:39.946 UTC 6fe6403a-12b8-4bf3-9c94-5c13071e5f3e 2014-03-20 15:26:46.493 UTC 4b67f702-f74d-44a4-85e4-b0948ce450eb 2014-03-24 17:50:23.373 UTC 209d8560-f6b8-4a83-b2b0-4265af159d5e 2014-03-20 15:54:34.857 UTC 54c3cfdc-b815-4985-a5d5-763b74287d47 2014-03-20 15:24:01.882 UTC f3fc8f54-271e-40d6-9a94-a40398469726 2014-03-20 17:29:26.317 UTC 711934ae-6b8c-493b-a095-ed559b1a21a6 2014-03-20 16:05:26.581 UTC Workflow6mg_list00aa0codon0taxonomic_content0dinuc0simple_traits0functional_content0Filter_list_of_strings_extracting_match_to_a_regex_2regex0in10id00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity regex 0 'text/plain' java.lang.String true in1 0 text/plain java.lang.String true id 0 0 workflow org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList UserNameHere 2014-03-25 17:17:55.824 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecomma_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity mg(.*)-(.*) net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_functionalregex0string0data11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true data 1 1 header 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2014-03-20 14:51:15.610 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeaa_contentmgID_list0aa_content00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_aminoacid_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecodon_usagemgID_list0codon_usage00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokedinucmgID_list0di_nucleotide_odds_ratio00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokefunctional_contentmgID_list0functional_content00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokesimple_traitsmgID_list0simple_traits00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketaxonomic_contentmgID_list0taxonomic_content00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regex_2regexcomma_sepvalueFilter_list_of_strings_extracting_match_to_a_regex_2in1Flatten_Listoutputlistremove_headers_functionalregexnew_line_sepvalueremove_headers_functionalstringmg_listFlatten_Listinputlistremove_headers_functionaldataaa_contentmgID_listmerge_aminoacid_data_2concatenatedmerge_aminoacid_data_2stringlistFilter_list_of_strings_extracting_match_to_a_regex_2idcodon_usagemgID_listmerge_aminoacid_data_2concatenateddinucmgID_listmerge_aminoacid_data_2concatenatedfunctional_contentmgID_listmerge_aminoacid_data_2concatenatedsimple_traitsmgID_listmerge_aminoacid_data_2concatenatedtaxonomic_contentmgID_listmerge_aminoacid_data_2concatenatedaaaa_contentaa_contentcodoncodon_usagecodon_usagetaxonomic_contenttaxonomic_contenttaxonomic_contentdinucdinucdi_nucleotide_odds_ratiosimple_traitssimple_traitssimple_traitsfunctional_contentfunctional_contentfunctional_content 267ec7e8-a717-43ec-8647-7cb22d578e8b 2014-03-20 16:17:35.892 UTC e459e87b-1c8b-49d5-ae8d-859b47e66f54 2014-03-20 16:11:37.243 UTC add9f9ab-27e1-4e29-8ca0-425d4ef18565 2014-03-20 17:08:20.374 UTC afc23b88-6254-45b4-ac35-f05145050463 2014-03-20 15:32:38.604 UTC 01e312ba-1ab7-4d5e-9d6e-f474671e972a 2014-03-20 15:09:51.709 UTC 02b5aed6-a610-447b-be62-31519df13e2d 2014-03-20 15:21:18.570 UTC 28f3f714-474a-41f1-8a1b-ece92901e27c 2014-03-20 15:21:58.848 UTC 8671d0fe-966b-4273-b3e9-1c0a8cbe8571 2014-03-20 16:38:57.713 UTC a81f7f81-7f86-4766-af13-5aa75f90a68a 2014-03-20 16:21:29.683 UTC 54c3cfdc-b815-4985-a5d5-763b74287d47 2014-03-20 15:24:01.882 UTC 7690de58-b0f9-4353-9ecd-021b83445b75 2014-03-24 18:04:23.341 UTC abc4ba88-0718-40bc-aa29-396017d1b649 2014-03-20 17:32:59.484 UTC 0bb62e28-567b-4a84-bf6f-4d3c191555e2 2014-03-25 17:18:03.677 UTC b757149c-4de5-4efe-a617-9519a4dba905 2014-03-20 14:23:12.259 UTC b94d2f96-dfe7-420d-b090-c08be1605e87 2014-03-24 17:51:13.604 UTC 8bdf1774-17f3-4ed5-9378-4e711a57ce63 2014-03-20 15:52:23.118 UTC c39c1178-e3fa-4773-93cb-6bd6ee8c2df9 2014-03-20 16:03:06.558 UTC 663492bc-20d7-40ed-a8f7-94388e54b723 2014-03-20 14:51:44.41 UTC 1d71417c-7bdd-46dd-9d6d-fe841d830510 2014-03-20 15:02:39.151 UTC 209d8560-f6b8-4a83-b2b0-4265af159d5e 2014-03-20 15:54:34.857 UTC e75a7b80-8430-4e9a-8e17-60bdb1d9cb3f 2014-03-20 16:24:58.893 UTC 46cf6c8c-9406-4ccb-a023-69868ccc7302 2014-03-24 17:53:16.655 UTC 51fabdbe-60ca-4101-b801-6e29a3c7f5ef 2014-03-20 14:55:01.974 UTC a8628ed1-8b4c-46e5-85ae-a93fef568a69 2014-03-20 16:49:14.232 UTC 3d5ac55c-192a-40b6-b165-b8eb10f68a9d 2014-03-20 14:32:17.935 UTC 21edfef8-77d4-4299-bc8a-51172596856a 2014-03-20 16:06:16.762 UTC ab0cbf4f-b40d-476a-915d-f615bfdaeb97 2014-03-20 15:11:12.372 UTC 6fe6403a-12b8-4bf3-9c94-5c13071e5f3e 2014-03-20 15:26:46.493 UTC eac39443-bd8b-43c2-8911-2e4ed34bb3b9 2014-03-20 15:22:43.394 UTC a8c7c7be-51eb-4e30-8dbb-daf7a1323f7c 2014-03-20 14:50:48.877 UTC 4adbf995-a371-4b28-8e7a-632a1e8c6d66 2014-03-20 16:39:18.832 UTC 576ea708-4df0-4c86-b2d2-901edfe8891d 2014-03-20 16:23:27.185 UTC 4168c5a4-77ae-42cc-a85b-b7136903dcea 2014-03-20 14:50:12.598 UTC d21e19fb-8034-440f-ae4b-30af42bf5bec 2014-03-21 15:32:19.322 UTC ca560582-fbca-4059-a5fe-c04ada19025b 2014-03-20 14:26:03.704 UTC 046338ba-c87e-4fa4-8a90-5152a36edec7 2014-03-24 18:03:18.403 UTC c23e470f-e7d6-4ee5-b748-a3e4a9a80e4b 2014-03-25 07:31:17.339 UTC 8443e8d7-f693-43d8-a052-6350829714dc 2014-03-20 14:27:04.950 UTC 42b551d1-1cd9-4c9b-96c8-ed4f44a128b7 2014-03-20 16:01:36.385 UTC 26227e50-77e8-4974-b387-5f37d523e007 2014-03-20 14:35:48.132 UTC 0ec58662-a6fe-4a7a-8c81-4c75671f363a 2014-03-20 18:04:47.691 UTC da9bf039-7ae5-48a5-9d18-c7b65c6c3229 2014-03-20 15:31:39.946 UTC 61f38a70-fca5-4836-9926-e1e3e486ffd2 2014-03-23 16:41:47.621 UTC c00554ff-60bb-4728-8309-df3cba61274d 2014-03-20 15:18:52.392 UTC 75496257-0149-4ebd-81fb-e87627dd0a4e 2014-03-20 15:06:52.151 UTC Metagenomic_Traits_Sdinuc00 File containing di-nucelotide frequencies. Example is from GOS dataset. Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_dinuc.txt 2013-08-07 09:32:15.824 UTC http://build.mygrid.org.uk/taverna/metagenomics/gos_dinuc.txt 2013-08-07 10:21:38.772 UTC codon00 http://build.mygrid.org.uk/taverna/metagenomics/gos_codon.txt 2013-08-07 10:21:44.783 UTC File containing the codon frequencies of predicted ORFs. Example is from GOS dataset. Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_codon.txt 2013-08-07 09:32:11.868 UTC aa00 http://build.mygrid.org.uk/taverna/metagenomics/gos_aa.txt 2013-08-07 10:21:52.660 UTC File containing the amino acid frequencies of predicted ORFs. Example is from GOS dataset. Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_aa.txt 2013-08-07 09:32:06.255 UTC func00 File containing a table of frequencies of functional annotation per sample. Column= functional annotation with first column = sampling site/sample, row = frequencies per sample. Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_functional.txt 2013-08-07 09:32:19.812 UTC http://build.mygrid.org.uk/taverna/metagenomics/gos_functional.txt 2013-08-07 10:21:32.516 UTC phylo00 File containing a table of frequencies of taxonomic group per sample. Column= taxonomic annotation with first column = sampling site/sample, row = frequencies per sample. Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_phylo.txt 2013-08-07 09:32:24.321 UTC http://build.mygrid.org.uk/taverna/metagenomics/gos_phylo.txt 2013-08-07 09:30:29.683 UTC traits00 Two column file specifying metagenomic description, column title must be Description e.g. A header row could be like this Site Description TotalMb NumberReads GC varGC rRNA Genes EGS ABratio TF Classified Example from Barberan et al. 2012: http://build.mygrid.org.uk/taverna/metagenomics/gos_traits.txt 2013-08-07 09:32:02.179 UTC http://build.mygrid.org.uk/taverna/metagenomics/gos_traits.txt 2013-08-07 10:22:45.40 UTC funcMantel0phyloMantel0funcNmdsPlot0funcNmdsTxt0phyloNmdsPlot0phyloNmdsTxt0bivariatePlot0traitsBiplot0traitsPcaPlot0summary_traits0pcaLog0traitsPCAlog0phyloNMDSLog0funcNMDSLog0NMDStraitsIn0phyloIn0funcIn0phylo_nmds00func_nmds00phyloNmds00funcNmds00phyloNmdsLog00funcNmdsLog00 Perform Non-MultiDimensional Scaling analysis of traits 2012-12-14 16:51:49.226 UTC net.sf.taverna.t2.activitiesrshell-activity1.5net.sf.taverna.t2.activities.rshell.RshellActivity traitsIn 0 false phyloIn 0 false funcIn 0 false phylo_nmds 0 0 func_nmds 0 0 phyloNmdsLog 0 0 funcNmdsLog 0 0 phyloNmds 0 0 funcNmds 0 0 false localhost 6311 false false traitsIn TEXT_FILE phyloIn TEXT_FILE funcIn TEXT_FILE phylo_nmds PNG_FILE func_nmds PNG_FILE phyloNmdsLog TEXT_FILE funcNmdsLog TEXT_FILE phyloNmds TEXT_FILE funcNmds TEXT_FILE net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeread_files_data_tranformation_pca_calculationtraits0phylo0func0aa0codon0dinuc0summary_traits00pcaLog00 Read input ports, transform data, calculate pkylogenetic and functional diversity and get first component for complex traits 2012-12-14 12:21:03.315 UTC net.sf.taverna.t2.activitiesrshell-activity1.5net.sf.taverna.t2.activities.rshell.RshellActivity dinuc 0 false codon 0 false aa 0 false func 0 false traits 0 false phylo 0 false pcaLog 0 0 summary_traits 0 0 false localhost 6311 false false dinuc TEXT_FILE codon TEXT_FILE aa TEXT_FILE func TEXT_FILE traits TEXT_FILE phylo TEXT_FILE pcaLog TEXT_FILE summary_traits TEXT_FILE net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMantelaaIn0traitsIn0dinucIn0codonIn0funcIn0phyloIn0phyloMantel00funcMantel00 Performs Mantel test to the different trait matrices 2012-12-14 12:35:00.746 UTC net.sf.taverna.t2.activitiesrshell-activity1.5net.sf.taverna.t2.activities.rshell.RshellActivity traitsIn 0 false dinucIn 0 false aaIn 0 false codonIn 0 false phyloIn 0 false funcIn 0 false phyloMantel 0 0 funcMantel 0 0 false localhost 6311 false false traitsIn TEXT_FILE dinucIn TEXT_FILE aaIn TEXT_FILE codonIn TEXT_FILE phyloIn TEXT_FILE funcIn TEXT_FILE phyloMantel TEXT_FILE funcMantel TEXT_FILE net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePCAtraitsIn0bivariatePlot00traitsBiplot00traitsPcaPlot00traitsPcaLog00 Perform a PCA of the traits 2012-12-14 16:52:13.876 UTC net.sf.taverna.t2.activitiesrshell-activity1.5net.sf.taverna.t2.activities.rshell.RshellActivity traitsIn 0 false bivariatePlot 0 0 traitsBiplot 0 0 traitsPcaPlot 0 0 traitsPcaLog 0 0 false localhost 6311 false false traitsIn TEXT_FILE bivariatePlot PNG_FILE traitsBiplot PNG_FILE traitsPcaPlot PNG_FILE traitsPcaLog TEXT_FILE net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 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5030c91e-5a68-4d44-bf82-befa69ee7c6c 2014-03-23 17:33:12.9 UTC cf5bb1fd-d7d3-4778-be52-774329bd148d 2012-07-07 09:12:01.759 UTC 000ad260-001c-403a-ac17-743001174301 2012-07-07 15:35:20.447 UTC 3fefc694-1f1c-4d1e-9412-b71dc18aa860 2013-03-27 11:53:12.29 UTC 52a5b559-5cb3-4c68-ab7f-d1f71f44367b 2012-07-06 22:36:23.283 UTC 89c727b7-23c5-448f-aa0e-ea76805d3c7c 2014-03-20 18:07:59.445 UTC 5c9dcf60-ff50-486c-91ae-06f189c63309 2012-07-03 07:12:19.721 UTC 4ca2c77a-0401-40eb-b3f3-67dfde4d8bbe 2012-07-07 14:48:41.775 UTC f60fe973-1d12-4937-8dc4-8e7e29801504 2014-03-25 17:56:18.265 UTC 2694dd5b-74e7-4f59-a235-3e2fa8868921 2012-07-03 11:14:34.807 UTC c7e34060-4588-4aff-a2b2-057f8a3eca48 2012-12-13 18:43:13.319 UTC e921121e-d77a-41e7-98ef-e14e5f85dee3 2013-07-09 16:37:58.458 UTC e2b5df22-4151-40fd-bfb4-904ee26a6f99 2012-07-02 20:35:52.739 UTC 787b4785-0f14-4f0b-9213-34b2665e684f 2012-07-02 21:14:43.838 UTC e8b1912e-fac8-4eb9-aaf5-07d0620124bc 2013-07-05 10:25:26.148 UTC 5d5889e2-2666-47ca-b514-bccbd500add7 2014-03-24 19:05:19.109 UTC 2adbfdda-9fd4-423c-bff8-0d9c4a86043c 2013-08-07 09:31:57.617 UTC 9e401cae-64d3-495e-9f5e-fd1a23b2e591 2012-07-06 10:16:46.574 UTC 8187b015-f905-4773-b420-511481668297 2012-07-02 21:41:47.335 UTC 0c57b0cc-e991-423a-8468-8bbe2e8def7d 2012-07-06 09:10:22.46 UTC 02ffa3cf-95e7-4649-b88e-5b6d00c44e49 2012-07-07 09:29:10.86 UTC 34c7ed25-c1f8-4e40-af27-2660a5709e78 2014-03-25 07:11:42.735 UTC d1e8b09a-aab7-4be0-995d-0a64c3a01a09 2012-07-02 15:10:28.607 UTC d6c8b254-ad57-407d-a902-ac48aa554650 2014-03-25 17:48:56.566 UTC d2e0731e-2334-4714-a91b-1d6d3cd2c0b7 2014-03-25 21:54:10.600 UTC a04282b7-9548-41b8-942d-5a2ee05cd635 2012-07-06 08:44:30.749 UTC 610e2c6e-1175-4bad-b17d-ea232d231731 2012-07-03 13:52:04.119 UTC d0234f4d-47f7-404e-96d2-9ba4ea5f29d7 2012-07-02 14:04:58.384 UTC 70b136dc-f110-4dc5-87b1-81425e6ef349 2012-07-02 14:18:15.172 UTC 1a959f6b-e82f-4679-9a15-86dbda6c0e44 2012-07-02 21:36:58.365 UTC c4798b5a-2659-46c4-ae03-d2977450a994 2014-03-21 15:33:33.774 UTC 49bfa333-d2f0-43a7-9e57-61499d6a4bdd 2012-12-13 18:44:31.773 UTC b8157cd3-b2b4-4c2e-9682-48aabcd11110 2012-07-07 14:00:01.528 UTC 582fcbf8-d2fe-4c1c-86c3-20e34ddbd5f3 2012-07-02 20:35:07.333 UTC 8b2a2987-c919-4cb7-8fe4-7abc2ab7f52e 2012-07-02 23:23:38.507 UTC cff5bb58-0317-4b06-b0d3-7f5a546cf0dd 2012-12-20 11:23:52.515 UTC bae2c552-3b54-41f1-9871-af87641ff65a 2012-07-06 06:33:17.840 UTC 5d16a869-dc48-4bc4-8889-781cbfe29793 2012-07-02 21:51:04.492 UTC c7c92ab3-c062-4c75-831b-193e11d5e8e3 2012-07-02 21:29:21.221 UTC 993714bc-fe05-489f-b116-d7b3e5701125 2012-07-07 12:39:15.72 UTC b6d65b42-0a82-4d89-9446-1ca8895aeba6 2012-07-07 15:11:33.719 UTC b0933a34-4859-46f0-9faa-c8f3308fc0f6 2012-07-07 09:10:34.738 UTC 7b33ee4d-c640-4d56-be18-224cd6c87f7c 2012-07-02 21:25:01.841 UTC 89db922b-eb51-41c8-91f7-221c48714bb8 2013-07-05 10:19:01.785 UTC 92916203-bd11-4abb-808e-2daebddc3f55 2013-07-09 16:39:46.919 UTC 1f157c12-d8f4-41a2-add8-22d7d6b2653f 2012-07-06 07:30:46.769 UTC 6995184d-181d-4009-bddb-10eba0a15551 2012-07-07 15:31:42.540 UTC 7314e25c-a959-49c0-87f7-efc651c12a4d 2012-07-02 21:51:34.813 UTC e81795e0-35a3-4d7e-ad95-a9779a69070a 2013-07-09 16:33:42.764 UTC 40d4e9e9-1486-4db5-ae63-2e5f19c5640c 2012-07-06 22:15:32.889 UTC d8a717a0-8662-4cbd-88c9-b8ed71bc25bb 2014-03-25 18:02:13.110 UTC 1d3c52e1-9877-4ee2-b9d1-a897345bf80c 2012-07-06 22:02:29.366 UTC b71a276c-20bd-4703-9258-4654bf0e0ef9 2012-07-07 05:35:22.124 UTC c4b7b27d-49e1-498c-8710-61fd96929aa1 2014-10-27 15:20:05.643 UTC 9f899f46-d91e-4176-a740-7632460bd209 2013-08-12 12:17:35.10 UTC 7d55c763-29ab-4225-9827-9466983285c9 2012-07-06 16:08:25.340 UTC aca3ac86-5b4d-4642-9734-ac85264ea9b6 2012-07-02 14:28:42.506 UTC ed30e720-747c-4296-bf13-cadbe7153ac5 2013-08-07 09:09:43.892 UTC e174d38d-e6d1-46a1-9d3f-41ed9a99ef22 2014-11-10 15:29:58.546 UTC 4026de73-6acc-44e1-aef4-cf7f7458e644 2014-03-25 07:10:42.90 UTC 518f69b4-5764-438b-a1c5-33b6a36bbbfd 2012-07-06 06:22:25.13 UTC 20cdb20d-62de-40e8-baa1-c08ec437aada 2012-07-02 21:16:30.691 UTC 7e10c313-c336-42d3-a3fc-f91f5619cabe 2012-07-06 20:58:11.656 UTC 69f5cb80-1a17-49a3-8d0e-ba13deb17df3 2012-07-07 06:00:38.213 UTC b71a2481-487d-49bc-90f1-fa093de860c0 2012-12-13 18:33:45.379 UTC 888c79ed-63be-42ba-88a1-050ac204c30e 2012-07-06 14:35:18.742 UTC f1d91779-7926-4f17-a680-ab64a5eba249 2012-07-02 14:08:42.477 UTC 99efa1f1-6229-4996-a789-c852f34e2e4c 2013-03-27 12:10:08.248 UTC 23ec334e-9df9-4750-9996-db4bb38abb81 2014-03-25 07:14:07.702 UTC fca7120b-7540-49b3-a415-7add23a36617 2012-07-06 08:29:49.524 UTC 64ac643e-132d-4315-b43b-9964f3957148 2013-07-05 10:25:56.907 UTC 4a86d9a6-ec68-432b-910e-1ec2d5382935 2012-07-03 11:12:49.853 UTC 147eb0df-7ca8-4358-8d1b-26938190206b 2012-12-13 18:12:10.196 UTC bdc6b791-6979-407a-b0aa-05ca29a0aa73 2012-07-02 14:20:50.239 UTC fe1ed035-d91f-4d49-8afc-b285778fe42d 2012-07-06 22:08:54.296 UTC 679bd0c6-674a-48ff-b083-d6ae638720b2 2012-07-06 06:17:28.285 UTC 078e81a3-845f-4b7e-9fed-4306c5940de2 2012-07-07 09:15:48.869 UTC 9702248c-e155-4697-b0c8-d861248fea77 2012-07-06 06:29:39.54 UTC 8a9b0303-cf3b-493f-81f7-85cf3866a857 2012-07-02 14:42:37.41 UTC 67988c87-a113-4282-8960-cc68b18aecc2 2012-12-14 11:33:13.782 UTC 8b1580b5-0d8d-472e-bdc5-bbbb3f42e4bc 2014-03-25 18:07:07.478 UTC 24b1a08e-0a72-436c-86f1-1660b4eca8d6 2012-07-02 20:36:36.981 UTC Metagenomic Traits Statistical Analysis 2013-08-11 22:16:00.965 UTC 3517f786-e415-4910-a1b4-1f8c936305fa 2014-03-25 21:37:17.394 UTC 6ebb87bd-34ff-482f-86fb-1a7668e5d582 2013-08-07 10:22:00.732 UTC 39a605a0-9f16-4bc8-9c35-5713f32baceb 2012-07-03 11:20:34.42 UTC 41cc6fd7-1f83-42e1-9ac4-2fcd73b03274 2012-07-04 22:49:26.319 UTC cdef0c09-57ce-40ee-9569-7f8f08ec4887 2012-07-07 14:03:34.193 UTC 45d2baaa-e86c-4a7e-ae85-97a318076241 2012-07-05 07:25:38.631 UTC e2118f6f-a91b-4d1b-8e99-69e32e4f98ec 2012-07-02 21:32:51.460 UTC d08e1fb6-dc6b-4a66-8cc7-05e4d11c7a21 2013-07-05 10:27:51.748 UTC Antonio Fernandez-Guerra, Pelin Yilmaz and Renzo Kottmann 2012-12-07 09:54:59.80 UTC 44d039ba-9cc5-44fc-8bf3-965a21f3a9b7 2012-07-05 07:50:40.993 UTC 7cecea87-74df-46b2-9f81-f2971a3767ae 2012-07-03 11:05:47.571 UTC 9dfa1fb5-2545-47f8-8a8b-146f2d36fef6 2013-08-07 10:23:06.719 UTC 9e42339c-41fb-4df1-a1db-33a5005a160c 2012-07-02 14:14:35.477 UTC 89506d36-1408-40ca-8420-c785fbbe1a2f 2012-07-06 21:44:58.232 UTC ce5ac09f-4435-40d1-a45e-76a64849b5cb 2012-07-07 08:45:08.989 UTC 3132b588-475a-46a2-9d74-24e119a8660e 2012-12-17 15:10:10.503 UTC 2022592b-75a9-425c-8747-92b58394666d 2012-07-07 05:44:54.69 UTC The Metagenomic Traits Statistical Analysis workflow computes the multivariate statistics related to the community traits outlined in Barberan et al. 2012 "Exploration of community traits as ecological markers in microbial metagenomes". The traits included in the statistical analyses range from GC content to functional diversity, and deliver a valuable set of ecological markers in order discriminate between habitats or geographic locations. Furthermore, intertrait relationships can be used as habitat descriptors or indicators of artefacts during sample processing. Overall, these metagenomics community traits approach, here combined in a single workflow, helps to interpret metagenomics data to gain a full understanding of microbial community patterns in a rigorous ecological framework. 2012-12-20 11:23:51.52 UTC 31acdc4b-202c-4fc4-98de-b7c24d125681 2012-12-13 18:49:21.430 UTC bc25cbc7-ca56-4260-969c-69cd0963dfe2 2012-07-05 07:17:02.529 UTC 719899f1-de14-420a-afb2-46945f05ac6e 2012-08-30 16:51:56.85 UTC d7e4cddb-de29-43b8-8a59-a13e54deacdb 2012-07-04 23:12:30.44 UTC 4f239021-b83c-4260-90b5-0fc131bc117e 2012-07-03 10:49:49.177 UTC a43b5a0e-a093-4f2c-be85-1210039b73ce 2014-03-25 21:40:34.84 UTC f3401ce0-6538-4b66-8f35-7b94429346d0 2012-07-02 15:06:10.663 UTC Workflow6mgID_list00codon_usage0codon_usageid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/codon-usage text/csv application/xml String false false false false false id java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_codon_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_aastring0regex0data00header00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true data 0 0 header 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2014-03-20 15:32:15.158 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true strippedlist 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_codon_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Unionlist11list21union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity list1 1 l('text/plain') java.lang.String true list2 1 l('text/plain') java.lang.String true union 1 1 workflow org.embl.ebi.escience.scuflworkers.java.StringSetUnion UserNameHere 2014-03-20 17:32:23.586 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecodon_usageidSplit_string_into_string_list_by_regular_expressionsplitmerge_codon_datastringlistremove_headers_aadataremove_headers_aastringcodon_usageresponseBodyremove_headers_aaregexnew_line_sepvalueRemove_String_Duplicatesstringlistremove_headers_aaheadermerge_codon_data_2stringlistString_List_UnionunionSplit_string_into_string_list_by_regular_expressionstringmgID_listSplit_string_into_string_list_by_regular_expressionregexnew_line_sepvalueString_List_Unionlist1Remove_String_DuplicatesstrippedlistString_List_Unionlist2merge_codon_dataconcatenatedcodon_usagemerge_codon_data_2concatenated c8dcbcff-486a-4413-a1ba-d4b268a0aa4c 2014-03-23 16:41:30.158 UTC afc23b88-6254-45b4-ac35-f05145050463 2014-03-20 15:32:38.604 UTC 9c038971-5ba5-439a-a4fa-ee3f393aa5f7 2014-03-20 16:20:56.834 UTC 01e312ba-1ab7-4d5e-9d6e-f474671e972a 2014-03-20 15:09:51.709 UTC 209d8560-f6b8-4a83-b2b0-4265af159d5e 2014-03-20 15:54:34.857 UTC ff2a5fb7-7988-4710-a715-2a11c4ee0c68 2014-03-20 16:49:07.64 UTC 8bdf1774-17f3-4ed5-9378-4e711a57ce63 2014-03-20 15:52:23.118 UTC 260c33c7-a73e-49fe-a912-a758572d674b 2014-03-20 16:24:53.195 UTC eac39443-bd8b-43c2-8911-2e4ed34bb3b9 2014-03-20 15:22:43.394 UTC 4168c5a4-77ae-42cc-a85b-b7136903dcea 2014-03-20 14:50:12.598 UTC 6a3ece39-742a-4555-9030-83b2d3dfe173 2014-03-20 17:05:00.812 UTC 90d48b43-011c-4970-9a69-b32ffa693f3c 2014-03-20 16:35:07.585 UTC ab0cbf4f-b40d-476a-915d-f615bfdaeb97 2014-03-20 15:11:12.372 UTC c00554ff-60bb-4728-8309-df3cba61274d 2014-03-20 15:18:52.392 UTC 711934ae-6b8c-493b-a095-ed559b1a21a6 2014-03-20 16:05:26.581 UTC da9bf039-7ae5-48a5-9d18-c7b65c6c3229 2014-03-20 15:31:39.946 UTC 1d71417c-7bdd-46dd-9d6d-fe841d830510 2014-03-20 15:02:39.151 UTC 51fabdbe-60ca-4101-b801-6e29a3c7f5ef 2014-03-20 14:55:01.974 UTC 54c3cfdc-b815-4985-a5d5-763b74287d47 2014-03-20 15:24:01.882 UTC 28f3f714-474a-41f1-8a1b-ece92901e27c 2014-03-20 15:21:58.848 UTC 02b5aed6-a610-447b-be62-31519df13e2d 2014-03-20 15:21:18.570 UTC 6fe6403a-12b8-4bf3-9c94-5c13071e5f3e 2014-03-20 15:26:46.493 UTC b757149c-4de5-4efe-a617-9519a4dba905 2014-03-20 14:23:12.259 UTC 5aed8676-fd46-421a-9a01-7cb2d5093e06 2014-03-20 17:32:25.987 UTC 8443e8d7-f693-43d8-a052-6350829714dc 2014-03-20 14:27:04.950 UTC 26b9b73b-1d4e-41cb-9500-a12d33047981 2014-03-21 15:30:21.385 UTC 75496257-0149-4ebd-81fb-e87627dd0a4e 2014-03-20 15:06:52.151 UTC 3d5ac55c-192a-40b6-b165-b8eb10f68a9d 2014-03-20 14:32:17.935 UTC ca560582-fbca-4059-a5fe-c04ada19025b 2014-03-20 14:26:03.704 UTC 26227e50-77e8-4974-b387-5f37d523e007 2014-03-20 14:35:48.132 UTC 44889605-4bfd-431a-9e4f-ae75768ff9aa 2014-03-20 16:47:10.979 UTC 663492bc-20d7-40ed-a8f7-94388e54b723 2014-03-20 14:51:44.41 UTC 084de299-65fd-4e59-a94e-d5cb8991c979 2014-03-20 16:00:05.407 UTC 05ce0a02-1b79-4124-a5ba-e2aaa0e6abcc 2014-03-24 17:49:27.200 UTC a8c7c7be-51eb-4e30-8dbb-daf7a1323f7c 2014-03-20 14:50:48.877 UTC faaf079a-a799-471f-a608-67876a0aa7e1 2014-03-20 16:11:27.67 UTC Workflow6mgID_list00aa_content0aminoacid_contentid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/amino-acid-content text/csv application/xml String false false false false false id java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_aminoacid_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_aastring0regex0data00header00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true data 0 0 header 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2014-03-20 15:32:15.158 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true strippedlist 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Union_2list21list11union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity list1 1 l('text/plain') java.lang.String true list2 1 l('text/plain') java.lang.String true union 1 1 workflow org.embl.ebi.escience.scuflworkers.java.StringSetUnion UserNameHere 2014-03-20 17:32:03.243 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_aminoacid_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeaminoacid_contentidSplit_string_into_string_list_by_regular_expressionsplitmerge_aminoacid_datastringlistremove_headers_aadataremove_headers_aastringaminoacid_contentresponseBodyremove_headers_aaregexnew_line_sepvalueRemove_String_Duplicatesstringlistremove_headers_aaheaderString_List_Union_2list2merge_aminoacid_dataconcatenatedString_List_Union_2list1Remove_String_Duplicatesstrippedlistmerge_aminoacid_data_2stringlistString_List_Union_2unionSplit_string_into_string_list_by_regular_expressionstringmgID_listSplit_string_into_string_list_by_regular_expressionregexnew_line_sepvalueaa_contentmerge_aminoacid_data_2concatenated faaf079a-a799-471f-a608-67876a0aa7e1 2014-03-20 16:11:27.67 UTC 75496257-0149-4ebd-81fb-e87627dd0a4e 2014-03-20 15:06:52.151 UTC 37a00080-d457-48cd-9985-a4263401694d 2014-03-20 17:32:05.796 UTC 8443e8d7-f693-43d8-a052-6350829714dc 2014-03-20 14:27:04.950 UTC 4168c5a4-77ae-42cc-a85b-b7136903dcea 2014-03-20 14:50:12.598 UTC b3731d43-afe7-4337-92b5-e09b164c7169 2014-03-21 15:27:28.100 UTC 3d5ac55c-192a-40b6-b165-b8eb10f68a9d 2014-03-20 14:32:17.935 UTC 260c33c7-a73e-49fe-a912-a758572d674b 2014-03-20 16:24:53.195 UTC eac39443-bd8b-43c2-8911-2e4ed34bb3b9 2014-03-20 15:22:43.394 UTC afc23b88-6254-45b4-ac35-f05145050463 2014-03-20 15:32:38.604 UTC 0fdf8e26-be14-4571-9724-d3600e17eaf7 2014-03-24 17:49:45.751 UTC 084de299-65fd-4e59-a94e-d5cb8991c979 2014-03-20 16:00:05.407 UTC 8bdf1774-17f3-4ed5-9378-4e711a57ce63 2014-03-20 15:52:23.118 UTC 9c038971-5ba5-439a-a4fa-ee3f393aa5f7 2014-03-20 16:20:56.834 UTC 02b5aed6-a610-447b-be62-31519df13e2d 2014-03-20 15:21:18.570 UTC a8c7c7be-51eb-4e30-8dbb-daf7a1323f7c 2014-03-20 14:50:48.877 UTC 01e312ba-1ab7-4d5e-9d6e-f474671e972a 2014-03-20 15:09:51.709 UTC 711934ae-6b8c-493b-a095-ed559b1a21a6 2014-03-20 16:05:26.581 UTC b757149c-4de5-4efe-a617-9519a4dba905 2014-03-20 14:23:12.259 UTC da9bf039-7ae5-48a5-9d18-c7b65c6c3229 2014-03-20 15:31:39.946 UTC 209d8560-f6b8-4a83-b2b0-4265af159d5e 2014-03-20 15:54:34.857 UTC 28f3f714-474a-41f1-8a1b-ece92901e27c 2014-03-20 15:21:58.848 UTC c00554ff-60bb-4728-8309-df3cba61274d 2014-03-20 15:18:52.392 UTC ab0cbf4f-b40d-476a-915d-f615bfdaeb97 2014-03-20 15:11:12.372 UTC ca560582-fbca-4059-a5fe-c04ada19025b 2014-03-20 14:26:03.704 UTC 9d06e333-afbf-4524-80fb-8104d3d6d253 2014-03-23 16:41:12.644 UTC 26227e50-77e8-4974-b387-5f37d523e007 2014-03-20 14:35:48.132 UTC 1d71417c-7bdd-46dd-9d6d-fe841d830510 2014-03-20 15:02:39.151 UTC 663492bc-20d7-40ed-a8f7-94388e54b723 2014-03-20 14:51:44.41 UTC 6fe6403a-12b8-4bf3-9c94-5c13071e5f3e 2014-03-20 15:26:46.493 UTC 54c3cfdc-b815-4985-a5d5-763b74287d47 2014-03-20 15:24:01.882 UTC 51fabdbe-60ca-4101-b801-6e29a3c7f5ef 2014-03-20 14:55:01.974 UTC Workflow35Sentinel00response_body00workflow_error_message0parse_job_statusstring0returnCode00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true returnCode 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2014-02-15 12:05:28.746 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeparse_job_statusstringresponse_bodyworkflow_error_messageparse_job_statusreturnCode ae828645-01b2-4c96-bf4c-036da1c8a77e 2014-02-15 10:04:39.915 UTC 9ac7864c-a097-455b-a7de-21bb3861e3d8 2014-02-15 12:05:36.706 UTC 8e70e22b-c8c8-4945-bcdc-71f3d338bebd 2014-02-15 12:03:44.82 UTC 0a71ad70-ce80-4d0d-a26b-ff57d65b2f4b 2014-02-14 16:48:23.73 UTC 9ad76bc2-eb6d-4a56-9138-f5cbfcfd10e2 2014-02-14 16:47:29.544 UTC fc1cde09-bda9-498c-929a-3bc39751bbd6 2014-02-15 11:59:45.334 UTC Workflow6mgID_list00simple_traits0aminoacid_contentid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/simple-traits text/csv application/xml String false false false false false id java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_aminoacid_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_simple_traitsstring0regex0data00header00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true data 0 0 header 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2014-03-20 15:32:15.158 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true strippedlist 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Union_2list21list11union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity list1 1 l('text/plain') java.lang.String true list2 1 l('text/plain') java.lang.String true union 1 1 workflow org.embl.ebi.escience.scuflworkers.java.StringSetUnion UserNameHere 2014-03-20 17:30:28.456 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_simple_traits_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeaminoacid_contentidSplit_string_into_string_list_by_regular_expressionsplitmerge_aminoacid_datastringlistremove_headers_simple_traitsdataremove_headers_simple_traitsstringaminoacid_contentresponseBodyremove_headers_simple_traitsregexnew_line_sepvalueRemove_String_Duplicatesstringlistremove_headers_simple_traitsheaderString_List_Union_2list2merge_aminoacid_dataconcatenatedString_List_Union_2list1Remove_String_Duplicatesstrippedlistmerge_simple_traits_datastringlistString_List_Union_2unionSplit_string_into_string_list_by_regular_expressionstringmgID_listSplit_string_into_string_list_by_regular_expressionregexnew_line_sepvaluesimple_traitsmerge_simple_traits_dataconcatenated 260c33c7-a73e-49fe-a912-a758572d674b 2014-03-20 16:24:53.195 UTC 8bdf1774-17f3-4ed5-9378-4e711a57ce63 2014-03-20 15:52:23.118 UTC 02b5aed6-a610-447b-be62-31519df13e2d 2014-03-20 15:21:18.570 UTC 663492bc-20d7-40ed-a8f7-94388e54b723 2014-03-20 14:51:44.41 UTC da9bf039-7ae5-48a5-9d18-c7b65c6c3229 2014-03-20 15:31:39.946 UTC 209d8560-f6b8-4a83-b2b0-4265af159d5e 2014-03-20 15:54:34.857 UTC 70b7e1e7-b721-4a9e-b7ab-f973641f634a 2014-03-23 16:40:06.426 UTC e90a7a67-879d-4cfe-86d8-ed38cda1f781 2014-03-20 17:08:03.135 UTC 8443e8d7-f693-43d8-a052-6350829714dc 2014-03-20 14:27:04.950 UTC 28f3f714-474a-41f1-8a1b-ece92901e27c 2014-03-20 15:21:58.848 UTC ca560582-fbca-4059-a5fe-c04ada19025b 2014-03-20 14:26:03.704 UTC b4d72433-3ad8-4a5c-a373-fdf0e556513c 2014-03-20 16:30:22.697 UTC 54c3cfdc-b815-4985-a5d5-763b74287d47 2014-03-20 15:24:01.882 UTC 51fabdbe-60ca-4101-b801-6e29a3c7f5ef 2014-03-20 14:55:01.974 UTC ab783f60-2dea-48f4-a485-2ca95ddd0894 2014-03-21 15:26:45.396 UTC a8c7c7be-51eb-4e30-8dbb-daf7a1323f7c 2014-03-20 14:50:48.877 UTC 1d71417c-7bdd-46dd-9d6d-fe841d830510 2014-03-20 15:02:39.151 UTC b757149c-4de5-4efe-a617-9519a4dba905 2014-03-20 14:23:12.259 UTC 76967133-24ad-4b80-a60f-fbe03a866235 2014-03-24 17:50:37.925 UTC 75496257-0149-4ebd-81fb-e87627dd0a4e 2014-03-20 15:06:52.151 UTC 26227e50-77e8-4974-b387-5f37d523e007 2014-03-20 14:35:48.132 UTC faaf079a-a799-471f-a608-67876a0aa7e1 2014-03-20 16:11:27.67 UTC 084de299-65fd-4e59-a94e-d5cb8991c979 2014-03-20 16:00:05.407 UTC 779960a0-6038-4eeb-b931-b4475ccb47c2 2014-03-20 16:31:47.431 UTC 711934ae-6b8c-493b-a095-ed559b1a21a6 2014-03-20 16:05:26.581 UTC 3578c284-385c-44d6-92ab-2d6d060628bd 2014-03-20 17:30:32.719 UTC 4168c5a4-77ae-42cc-a85b-b7136903dcea 2014-03-20 14:50:12.598 UTC 3d5ac55c-192a-40b6-b165-b8eb10f68a9d 2014-03-20 14:32:17.935 UTC afc23b88-6254-45b4-ac35-f05145050463 2014-03-20 15:32:38.604 UTC ab0cbf4f-b40d-476a-915d-f615bfdaeb97 2014-03-20 15:11:12.372 UTC eac39443-bd8b-43c2-8911-2e4ed34bb3b9 2014-03-20 15:22:43.394 UTC c00554ff-60bb-4728-8309-df3cba61274d 2014-03-20 15:18:52.392 UTC 9c038971-5ba5-439a-a4fa-ee3f393aa5f7 2014-03-20 16:20:56.834 UTC 01e312ba-1ab7-4d5e-9d6e-f474671e972a 2014-03-20 15:09:51.709 UTC 6fe6403a-12b8-4bf3-9c94-5c13071e5f3e 2014-03-20 15:26:46.493 UTC Microbial_Metagenomimg_list00 A list of metagenomes exported from the Metagenomic Traits Database in CSV format. Visit http://mb3is.megx.net/mg-traits/samples to compile the list of metagnemoes you want to analyze. 2014-08-20 17:17:58.982 UTC "Id","Sample Name","Sample Environment" "mg660-JCVI_SMPL_1103283000008","GS002","Coastal" "mg653-JCVI_SMPL_1103283000001","GS000a","Open Ocean" "mg657-JCVI_SMPL_1103283000005","GS001a","Open Ocean" "mg733-JCVI_SMPL_GS112a","GS112a","Open Ocean" 2014-03-25 07:37:58.510 UTC phyloMantel0 Mantel test against phylogenetic distance matrix (controlling for functional response) 2014-03-27 12:59:07.131 UTC funcMantel0 Mantel test against functional distance matrix (controlling for phylogenetic response) 2014-03-27 13:00:59.790 UTC summary_traits0 A table with all the traits used in this statistical analysis. 2014-08-20 17:20:21.881 UTC pcaLog0 Log file from the PCA analysis 2014-03-27 13:01:19.76 UTC traits_biplot0 PCA biplot. 2014-08-20 17:20:59.508 UTC bivariatePlot0 All against all trait realtionships. 2014-08-20 17:18:49.750 UTC traitsPCAPlot0 Plot of the PCA of all traits. 2014-08-20 17:19:28.717 UTC funcNMDSLog0 Log file from the functional NMDS 2014-03-27 14:26:58.570 UTC taxoNMDSLog0 Log file from the functional NMDS 2014-03-27 14:29:20.162 UTC funcNMDSTxt0 Data used for the functional NMDS plot 2014-03-27 14:26:37.541 UTC taxoNMDSPlot0 Plot of the taxonomic NMDS 2014-03-27 14:27:19.296 UTC funcNMDSPlot0 Plot of the functional NMDS 2014-03-27 13:06:20.599 UTC taxoNMDStxt0 Data used for the taxonomic NMDS plot 2014-03-27 14:28:28.267 UTC aa_content0 Aminco Acid content ot the metagenomes. 2014-08-20 17:22:31.716 UTC codon_usage0 Codon Usage data of the metagenomes. 2014-08-20 17:22:58.839 UTC di_nucleotide_odds_ratio0 Di-nucleotide odds-ration data of the metagenomes. 2014-08-20 17:23:19.535 UTC functional_content0 Functional content data of the metagenomes. 2014-08-20 17:23:51.908 UTC simple_traits0 Simple triats data of the metagenomes. 2014-08-20 17:24:15.297 UTC taxonomic_content0 Taxonomic content of the metagenomes. 2014-08-20 17:25:41.385 UTC retrieve_traitsmg_list0dinuc00functional_content00aa00simple_traits00taxonomic_content00codon00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMetagenomic_Traits_Sdinuc0func0aa0traits0phylo0codon0phyloMantel00funcMantel00summary_traits00pcaLog00traitsBiplot00bivariatePlot00traitsPcaPlot00funcNMDSLog00phyloNMDSLog00funcNmdsTxt00phyloNmdsPlot00funcNmdsPlot00phyloNmdsTxt00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeretrieve_traitsmg_listmg_listMetagenomic_Traits_Sdinucretrieve_traitsdinucMetagenomic_Traits_Sfuncretrieve_traitsfunctional_contentMetagenomic_Traits_Saaretrieve_traitsaaMetagenomic_Traits_Straitsretrieve_traitssimple_traitsMetagenomic_Traits_Sphyloretrieve_traitstaxonomic_contentMetagenomic_Traits_Scodonretrieve_traitscodonphyloMantelMetagenomic_Traits_SphyloMantelfuncMantelMetagenomic_Traits_SfuncMantelsummary_traitsMetagenomic_Traits_Ssummary_traitspcaLogMetagenomic_Traits_SpcaLogtraits_biplotMetagenomic_Traits_StraitsBiplotbivariatePlotMetagenomic_Traits_SbivariatePlottraitsPCAPlotMetagenomic_Traits_StraitsPcaPlotfuncNMDSLogMetagenomic_Traits_SfuncNMDSLogtaxoNMDSLogMetagenomic_Traits_SphyloNMDSLogfuncNMDSTxtMetagenomic_Traits_SfuncNmdsTxttaxoNMDSPlotMetagenomic_Traits_SphyloNmdsPlotfuncNMDSPlotMetagenomic_Traits_SfuncNmdsPlottaxoNMDStxtMetagenomic_Traits_SphyloNmdsTxtaa_contentretrieve_traitsaacodon_usageretrieve_traitscodondi_nucleotide_odds_ratioretrieve_traitsdinucfunctional_contentretrieve_traitsfunctional_contentsimple_traitsretrieve_traitssimple_traitstaxonomic_contentretrieve_traitstaxonomic_content ddea614b-669f-4558-9856-477723b87000 2014-03-27 14:29:34.524 UTC dcbd86e6-1b32-4770-a670-988afca54042 2014-04-01 09:36:26.600 UTC 99843828-384e-47c9-8d19-04728dc49971 2014-03-25 07:32:17.200 UTC f84c0f64-8762-4f00-b492-29f59d82945a 2014-03-25 18:02:16.149 UTC 5d01d787-fb26-4525-ae12-c5691c251367 2014-03-27 12:42:04.69 UTC 8d104bef-9b0e-4992-8459-70654cea2908 2014-03-21 15:33:43.968 UTC 5a51a412-cc64-4af4-b7d7-25b4fb40b866 2014-03-27 14:40:52.644 UTC 241d76ba-79e8-4ee2-9ee9-e3810f3c8df2 2014-03-23 12:09:33.107 UTC 2e2beacb-9bc8-4bf1-8fd1-4ac33bf85b6c 2014-03-25 17:48:59.663 UTC f30ff904-a3af-4004-ba2c-437d0e722cb1 2014-03-25 21:41:00.573 UTC d5807313-705f-4ff5-b1d2-fce2fa53976e 2014-03-25 17:56:25.480 UTC 1eb83722-90fd-4e77-850a-ef80d89dad63 2014-03-25 18:40:58.440 UTC 1403e40f-b811-4e7d-9d2d-823f2844b96b 2014-08-20 17:20:03.527 UTC a711a0b1-bd59-4740-acec-69a6edf7fbe5 2014-03-25 17:20:03.547 UTC 4ba1f2ce-2533-4103-baaf-f8c70825a6d8 2014-03-24 18:05:10.847 UTC 5f3e98a6-34bc-41c4-831c-42e4f49f8275 2014-03-23 17:33:22.514 UTC fd66e45c-0478-4680-ae7a-1f801644191a 2014-08-20 18:04:47.812 UTC 0c81d369-47f0-4d0e-9c5d-7a809e74c548 2014-03-25 21:54:24.993 UTC 7607cf9a-77c6-4408-bdfd-acf39e6aff1b 2014-03-25 17:14:12.487 UTC 926750c7-6806-4da2-85fe-f1759685b484 2014-08-20 17:23:46.828 UTC 18d781dc-8c40-4f8a-868e-15afa4584f64 2014-03-20 17:42:00.960 UTC e1e39db3-38a3-468b-87bf-ea99fe07c8bb 2014-03-24 17:18:51.874 UTC 57db6ffe-aa94-477b-97eb-de9467ad9538 2014-03-27 13:06:17.291 UTC dedd5a07-47b8-4e4c-a22d-138bc3dc9015 2014-11-10 15:02:37.964 UTC dd244356-3f13-406f-8ec9-f42ea7683748 2014-03-24 17:51:18.53 UTC 292745d5-ebe0-4e4d-a167-fada73583aee 2014-03-25 18:07:17.349 UTC 7f4cf4d7-3e67-4348-8207-9bf7017f6446 2014-11-10 16:34:32.980 UTC e220da8b-a27d-499a-899a-d4e3ed38c2cb 2014-03-25 07:26:38.616 UTC eefd01e6-f2d8-4ad4-ad02-c42c11e5dd69 2014-03-23 16:41:51.743 UTC e3ec9b0a-89b6-4e37-81b9-31024b4bcf66 2014-03-25 17:26:25.527 UTC 1e60157b-77f1-4e12-a7cd-67d7f1334e73 2014-08-20 17:19:25.357 UTC 2a071c0a-7270-4690-9f4a-f07ae566e6ad 2014-08-20 17:24:58.185 UTC 72541358-a74b-4d00-99a0-f0ae57bd2e24 2014-03-27 13:05:17.265 UTC a78900f4-f0f6-41e2-a63a-17af8561124a 2014-04-01 08:52:24.114 UTC 59495c12-c1a1-420c-92ac-00b809ddba01 2014-03-25 21:21:20.431 UTC 855af35a-92bc-4d0c-bdf7-24daea1acfd1 2014-03-25 21:37:23.574 UTC 6b57302d-c512-43a7-a2e8-cf6b3d969972 2014-08-20 17:26:22.772 UTC ccb2aa68-206f-4e11-acc5-e1f223cc33c9 2014-04-01 08:58:56.111 UTC cf5d0edc-85e6-48ed-b095-ab7fe8eb5763 2014-03-25 07:38:15.476 UTC 7cd6c950-8be7-4b7e-9c50-084846ad8760 2014-03-20 18:08:13.821 UTC 30d3b473-7978-4f3d-8cb1-3fec73590836 2014-08-20 17:17:51.463 UTC a0d14108-e0e5-4efb-81b5-9f0f956a3da0 2014-08-20 17:24:11.222 UTC a1335822-d748-4559-a04c-1a11bcaade31 2014-03-25 18:50:19.785 UTC 92035dc5-df08-4152-a8ca-876332485761 2014-08-20 17:22:27.58 UTC 559be13f-3473-4bae-9e39-c23b6b4143ea 2014-08-20 18:04:33.761 UTC f549af85-0ecf-423d-a9ba-8068daab2975 2014-03-24 19:10:08.323 UTC 317b76f2-1e99-40d8-bbb5-c4dcb0652107 2014-03-27 15:05:20.612 UTC This workflow retrieves the following microbial metagenomic traits from the Microbial Metagenomic Trait Database: -GC content -Variance of GC content -Dinucleotides -Number of rRNA -Codon usage -Amino acid composition -Acidic to basic amino acids ratio -% of Transcriptional factors -% of classified reads -Functional content -Functional diversity -Taxonomic content -Taxonomic diversity After the retrieval performs the ecological analyses described in Barberan et al. 2012 (http://dx.doi.org/10.1111/j.1365-294X.2011.05383.x) Please read: https://wiki.biovel.eu/display/doc/Metagenomic+Workflows 2014-08-20 18:04:39.472 UTC bd9faf4f-9edd-4cf4-9013-46aebdeb4bda 2014-10-27 15:20:40.391 UTC 4faeea64-a26f-4af5-a43e-78a3f17e20d4 2014-03-25 07:34:43.888 UTC a7af0344-f311-4d48-8bc4-a2e04f49d8cb 2014-03-25 20:17:03.848 UTC 2c86c85e-17d0-4859-b9e3-e5a9f1712f20 2014-11-10 15:30:04.763 UTC 9eb76bf9-d8b3-4d27-a759-79432104e3f6 2014-03-25 18:32:38.640 UTC 8681003e-f451-4bf9-b7c0-67eaeb85e3fc 2014-08-20 18:06:27.29 UTC Antonio Fernandez-Guerra, Pelin Yilmaz and Renzo Kottmann 2014-03-27 12:41:40.497 UTC Microbial Metagenomic Trait Statistical Analysis Workflow 2014-08-20 18:04:51.9 UTC Workflow6mgID_list00di_nucleotide_odds_ratio0di_nucleotide_odds_ratioid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/di-nucleotide-odds-ratio text/csv application/xml String false false false false false id java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_dinuc_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_dinucstring0regex0data00header00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true data 0 0 header 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2014-03-20 15:32:15.158 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true strippedlist 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Union_2list21list11union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity list1 1 l('text/plain') java.lang.String true list2 1 l('text/plain') java.lang.String true union 1 1 workflow org.embl.ebi.escience.scuflworkers.java.StringSetUnion UserNameHere 2014-03-20 17:32:54.721 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_dinuc_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokedi_nucleotide_odds_ratioidSplit_string_into_string_list_by_regular_expressionsplitmerge_dinuc_datastringlistremove_headers_dinucdataremove_headers_dinucstringdi_nucleotide_odds_ratioresponseBodyremove_headers_dinucregexnew_line_sepvalueRemove_String_Duplicatesstringlistremove_headers_dinucheaderString_List_Union_2list2merge_dinuc_dataconcatenatedString_List_Union_2list1Remove_String_Duplicatesstrippedlistmerge_dinuc_data_2stringlistString_List_Union_2unionSplit_string_into_string_list_by_regular_expressionstringmgID_listSplit_string_into_string_list_by_regular_expressionregexnew_line_sepvaluedi_nucleotide_odds_ratiomerge_dinuc_data_2concatenated 01e312ba-1ab7-4d5e-9d6e-f474671e972a 2014-03-20 15:09:51.709 UTC b757149c-4de5-4efe-a617-9519a4dba905 2014-03-20 14:23:12.259 UTC 4c9bb824-ccd6-4473-b59f-b86ab9a5eb94 2014-03-20 16:37:18.69 UTC 711934ae-6b8c-493b-a095-ed559b1a21a6 2014-03-20 16:05:26.581 UTC 8443e8d7-f693-43d8-a052-6350829714dc 2014-03-20 14:27:04.950 UTC 02b5aed6-a610-447b-be62-31519df13e2d 2014-03-20 15:21:18.570 UTC 51fabdbe-60ca-4101-b801-6e29a3c7f5ef 2014-03-20 14:55:01.974 UTC 663492bc-20d7-40ed-a8f7-94388e54b723 2014-03-20 14:51:44.41 UTC e8f78f91-306e-4194-b31e-1aa5d566800c 2014-03-21 15:30:54.270 UTC e94145c2-522e-447d-a586-7a1c93ef2cbb 2014-03-20 17:32:56.747 UTC 8bdf1774-17f3-4ed5-9378-4e711a57ce63 2014-03-20 15:52:23.118 UTC 1d71417c-7bdd-46dd-9d6d-fe841d830510 2014-03-20 15:02:39.151 UTC 8dac744d-1af5-4310-8555-3657375968e8 2014-03-24 17:50:10.94 UTC 4168c5a4-77ae-42cc-a85b-b7136903dcea 2014-03-20 14:50:12.598 UTC 6fe6403a-12b8-4bf3-9c94-5c13071e5f3e 2014-03-20 15:26:46.493 UTC 084de299-65fd-4e59-a94e-d5cb8991c979 2014-03-20 16:00:05.407 UTC afc23b88-6254-45b4-ac35-f05145050463 2014-03-20 15:32:38.604 UTC 9c038971-5ba5-439a-a4fa-ee3f393aa5f7 2014-03-20 16:20:56.834 UTC da9bf039-7ae5-48a5-9d18-c7b65c6c3229 2014-03-20 15:31:39.946 UTC 15064f5a-7370-49d8-8419-85614cc90fba 2014-03-23 16:41:45.470 UTC eac39443-bd8b-43c2-8911-2e4ed34bb3b9 2014-03-20 15:22:43.394 UTC 26227e50-77e8-4974-b387-5f37d523e007 2014-03-20 14:35:48.132 UTC 28f3f714-474a-41f1-8a1b-ece92901e27c 2014-03-20 15:21:58.848 UTC 209d8560-f6b8-4a83-b2b0-4265af159d5e 2014-03-20 15:54:34.857 UTC c00554ff-60bb-4728-8309-df3cba61274d 2014-03-20 15:18:52.392 UTC a8c7c7be-51eb-4e30-8dbb-daf7a1323f7c 2014-03-20 14:50:48.877 UTC faaf079a-a799-471f-a608-67876a0aa7e1 2014-03-20 16:11:27.67 UTC ca560582-fbca-4059-a5fe-c04ada19025b 2014-03-20 14:26:03.704 UTC 75496257-0149-4ebd-81fb-e87627dd0a4e 2014-03-20 15:06:52.151 UTC 3d5ac55c-192a-40b6-b165-b8eb10f68a9d 2014-03-20 14:32:17.935 UTC ab0cbf4f-b40d-476a-915d-f615bfdaeb97 2014-03-20 15:11:12.372 UTC 54c3cfdc-b815-4985-a5d5-763b74287d47 2014-03-20 15:24:01.882 UTC 260c33c7-a73e-49fe-a912-a758572d674b 2014-03-20 16:24:53.195 UTC Workflow30Sentinel00response_body00mgID0parse_job_statusstring0public_label00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true public_label 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2014-02-15 16:21:11.599 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeparse_job_statusstringresponse_bodymgIDparse_job_statuspublic_label 578a3d8e-d18b-4213-b092-b2fedbdd09cf 2014-02-15 16:17:14.831 UTC 0314854e-d984-49d4-8076-2d27db3164a9 2014-02-15 16:21:26.56 UTC a194d37f-2b6d-4b2b-92c0-da30884b718f 2014-02-14 16:45:35.897 UTC a9482d67-2084-4748-b8cc-9a74a0123615 2014-02-14 16:47:16.261 UTC 6d34643f-61d8-4454-8626-3ff2ffb3c1d9 2014-02-14 16:46:06.809 UTC 4037619c-8ffd-4c6e-a154-d0970ce04bf3 2014-02-15 16:16:46.659 UTC Workflow6mgID_list00taxonomic_content0taxonomic_contentid0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://mb3is.megx.net/ws/v1/mg-traits/v1.0.0/{id}/taxonomic-content text/csv application/xml String false false false false false id java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_taxonomic_datastringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeremove_headers_aastring0regex0header00data00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true data 0 0 header 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2014-03-20 15:32:15.158 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true strippedlist 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Union_2list21list11union11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity list1 1 l('text/plain') java.lang.String true list2 1 l('text/plain') java.lang.String true union 1 1 workflow org.embl.ebi.escience.scuflworkers.java.StringSetUnion UserNameHere 2014-03-20 17:31:16.428 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_taxonomic_data_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokenew_line_sepvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketaxonomic_contentidSplit_string_into_string_list_by_regular_expressionsplitmerge_taxonomic_datastringlistremove_headers_aadataremove_headers_aastringtaxonomic_contentresponseBodyremove_headers_aaregexnew_line_sepvalueRemove_String_Duplicatesstringlistremove_headers_aaheaderString_List_Union_2list2merge_taxonomic_dataconcatenatedString_List_Union_2list1Remove_String_Duplicatesstrippedlistmerge_taxonomic_data_2stringlistString_List_Union_2unionSplit_string_into_string_list_by_regular_expressionstringmgID_listSplit_string_into_string_list_by_regular_expressionregexnew_line_sepvaluetaxonomic_contentmerge_taxonomic_data_2concatenated afc23b88-6254-45b4-ac35-f05145050463 2014-03-20 15:32:38.604 UTC 54c3cfdc-b815-4985-a5d5-763b74287d47 2014-03-20 15:24:01.882 UTC 9c038971-5ba5-439a-a4fa-ee3f393aa5f7 2014-03-20 16:20:56.834 UTC e40e9bf7-8f92-4bef-ab1a-657cfdf32885 2014-03-21 15:27:06.980 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