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Items tagged with "NBIC" (9)

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30?size=60x60 Nl Marco Roos
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Blob From biologist to web service to Taverna to myExperi...

Created: 2008-03-21 19:00:12 | Last updated: 2008-03-23 10:39:27

Credits: User Marco Roos User Martijn Schuemie Network-member AID Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A movie to show the principle of the round trip from a biology question via pieces of code wrapped as web services and combined into a workflow (computational experiment) in Taverna, via uploading to myExperiment and back to the biologist through myExperiment's run facility. NB: at the time of uploading this movie the runner-option was in test-phase. It is important to note that the workflow combines the work of various scientists with different expertise and some at remote locations around ...

File type: AVI video

Comments: 1 | Viewed: 469 times | Downloaded: 373 times

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728?size=60x60 Nl Barend
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Blob The general plan and guidelines for BioAssist from O...

Created: 2009-10-26 10:15:03

Credits: User Barend

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document has been accepted at the NBIC management team meeting of 22 October 2009, and will serve as ageneral guideline to run the BioAssist program of NBIC. It might be a good idea to read the short document before you contact BioAssist for support in the scope of your 'code' or 'content' interests. Barend Mons

File type: application/x-download

Comments: 0 | Viewed: 66 times | Downloaded: 44 times

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Groups (5)
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30?size=80x80 Nl Marco Roos
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Network-member e-science support team for NBIC

Unique name: eScienceSupportTeam4NBIC
Created: Sunday 16 March 2008 22:23:11 (UTC)

This group brings together scientists with expertise in both (medical) bioinformatics and e-science. The members can give advice to bioinformaticians who want to adopt an 'e-science approach'. They want to share their expertise and experience for the application of technologies such as workflow, web/biomoby services, grid, semantic web, etcetera. The group was founded in particular for the Du...

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30?size=80x80 Nl Marco Roos
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Network-member BioAssist_NL

Unique name: bioassist_nl
Created: Wednesday 01 August 2007 13:05:51 (UTC)

NBIC's BioAssist program BioAssist[1], organised by the Netherlands BioInformatics Centre (NBIC[2]), is a program for support and dissemination of bioinformatics tools and expertise in the Netherlands. It advocates the use of e-science standards such as web services and workflow. It is associated with the projects VL-e[3] and BioRange[4]. Links: http://www.nbic.nl/support/BioAssist...

4 shared items   |   0 announcements

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4398?size=80x80 Nl Rob Hooft
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Network-member NBIC Central Engineering Team

Unique name: c
Created: Friday 11 September 2009 08:21:17 (UTC)

The software production factory for NBIC, making tools developed in academic environments available to a larger audience

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30?size=80x80 Nl Marco Roos
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Network-member NBIC Life Science Information Management 2013


Created: Tuesday 18 June 2013 15:51:17 (UTC)

myExperiment group for the NBIC course for Managing Life Science Information, LUMC, Leiden, 2013

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30?size=80x80 Nl Marco Roos
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Network-member BioSemantics

Unique name: biosemantics
Created: Thursday 30 June 2011 13:06:48 (UTC)

Group for members of the BioSemantics group and their close collaborators.BiosemanticsWith the explosion of information in the biomolecular field, there is a dire need for information technology that assists in retrieving, extracting, and relating information and knowledge in the biomedical literature and databases. Biosemantics researchers and developers develop, evaluate, and apply such techn...

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Workflows (2)
Taverna 1
Uploader
414?size=60x60 Nl Markf

Workflow simple_xcms_pipeline (1)

Thumb
A (very) simple demo pipeline that takes an experiment ID, gets the data from the (currently in beta) metware metabolomics datawarehouse and runs XCMS.

Created: 2008-07-14 | Last updated: 2008-07-14

Credits: User Markf

Taverna 2
Uploader
30?size=60x60 Nl Marco Roos

Workflow OPS_FreetextToTargetInfo (1)

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Workflow to retrieve target information for the concepts as refered to by humans (the input). Known issues: It produces error values for the concepts returned by ConceptWiki that are apparently not present in OPS (e.g. for "ezh2" and limit=10, it gives 7/10 error values vs "ezh2 (homo sapiens)" giving 2 valid values).

Created: 2013-06-18

Credits: User Marco Roos User Katy Wolstencroft User paul groth

What is this?

Linked Data

Non-Information Resource URI: http://myexperiment.org/tags/334


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Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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