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Project Biovel

Pack Damping ratio pack


Created: 2014-07-02 13:32:31 | Last updated: 2014-07-25 11:07:16

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Damping ratio pack contains a workflow that provides an environment to calculate the damping ratio of several matrices and plot them.The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the population converges ...

8 items in this pack

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Project Biovel

Pack Age specific survival analysis pack


Created: 2014-07-02 11:49:01 | Last updated: 2015-05-19 09:46:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The age-specific survival analysis pack has a workflow that analyse the basic information on the mean, variance and coefficient of variation (CV) of the time spent in each stage class and the mean and variance of the time to death.Analyses:Fundamental matrix (N)Variance (var)Coefficient of variation (CV)MeanetaVareta

3 items in this pack

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Creator
Project Biovel

Pack Matrix Population Model construction pack


Created: 2014-06-19 11:23:27 | Last updated: 2014-07-25 12:48:25

This pack contains a workflow, a file and documentation (tutorial to run the workflow).Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Workflow for local executionThe Creation of a stage matrix model Workflow allows us to construct a stage o several stage matrices. This workflow create a stage matrix based on two years census data that contains transitions probabilities from each stage to the next, of tagged or mapped individuals of...

4 items in this pack

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Project Biovel

Pack Preparatory working with Biome-BGC Projects database...


Created: 2014-05-26 06:10:06 | Last updated: 2014-05-27 15:23:06

Various meteorology, EPC (ecophysiology parameter) and observation files for Biome-BGC simulation runs.

9 items in this pack

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Project Biovel

Pack Understanding Basics of a Biome-BGC simulation run


Created: 2014-05-21 04:31:40 | Last updated: 2014-05-21 05:03:34

Biome-BGC is a biogeochemical model that simulates the storage and flux of water, carbon, and nitrogen between the ecosystem and the atmosphere, and within the components of the terrestrial ecosystems (Thornton, 2000). The Biome-BGC was developed by the Numerical Terradynamic Simulation Group (NTSG), University of Montana.The executable code of Biome-BGC are embedded in web services and workflows, while input and parameter files or datasets are managed with Biome-BGC Projects d...

3 items in this pack

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Project Biovel

Pack Phylogenetic Diversity


Created: 2014-05-19 12:29:08 | Last updated: 2014-05-19 13:13:10

Tools to study diversity across sample and environment taking account the phylogenetic structure of the observation

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Project Biovel

Pack Stage vectors, Survival and Growth rate curves (demo...


Created: 2014-04-03 08:11:33 | Last updated: 2014-07-25 12:41:24

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices:Population projectionSurvival values calculations per stage per year and its respective plot;Growth rates (lambda) calculations per year and its respective plot;Stage Vectors calculations and their respective plots.

8 items in this pack

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Pack Taverna 2.5 Biodiversity Starter Pack


Created: 2014-04-02 12:40:42 | Last updated: 2017-01-09 13:09:17

This is a Starter Pack for Taverna 2.5 Biodiversity edition - it contains a number of example workflows to showcase various features of Taverna 2.5 Biodiversity and help you get started using it.Workflows from this Starter pack can also be found in the myExperiment perspective of the Taverna Workbench.Tutorials for Taverna are available under the Taverna 2.x documentation on the Taverna Web site.Also check out the Taverna User Manual.

14 items in this pack

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Project Biovel

Pack Life Table Response Experiments Fixed design Year Ef...


Created: 2014-02-27 12:49:10 | Last updated: 2014-08-27 09:58:12

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Life Table Response Experiments Year Effect in One Location or Place workflow provides an environment to analyse two or more matrices from different years in one location. The objective of this workflow is to determine the effects of the research years (2 or more) in one place on λ. This workflow performs a fixed LTRE, one way design (Caswell 2001).LTRE is a retrospective analysis (Caswell 1989),...

9 items in this pack

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Project Biovel

Pack Life Table Response Experiments Fixed design year ef...


Created: 2014-02-21 13:12:33 | Last updated: 2014-08-21 08:06:21

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Life Table Response Experiments year effect for multiple places workflow provides an environment to analyse two or more matrices (e.g., two or more matrices of different years of one place) of two or more different locations. The objective of this workflow is to determine the effects of the research years (2 or more) on λ. This workflow performs a fixed LTRE, one way design (Caswell 2001).LTRE is...

13 items in this pack

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