1. Home
  2. Groups
  3. BioVeL internal
  4. Packs

BioVeL internal Packs

Search filter terms
Filter by tag
Filter by user
Filter by licence
Results per page:
Sort by:
Showing 35 results. Use the filters on the left and the search box below to refine the results.
Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Matrix Population Model construction and analysis pack


Created: 2013-08-13 14:31:09 | Last updated: 2015-06-12 13:48:43

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Matrix Population Models Workflow provides an environment for create a stage-matrix with no density dependence and perform several analyses on it.Analyses:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Bootstrap of observed census transitions (Confidence intervals of λ).Survival curveKeyfitz’s ΔCohen’s cumulative distanceTh...

4 items in this pack

Comments: 0 | Viewed: 254 times | Downloaded: 70 times

Tags:
Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Matrix Population Models analyses pack


Created: 2013-08-14 10:37:55 | Last updated: 2014-07-25 10:56:14

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Matrix Population Models Workflow provides an environment  to perform several analyses on a stage-matrix with no density dependence:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Resample a projection matrix (Confidence intervals of λ).Survival curveKeyfitz’s ΔCohen’s cumulative distance This workflow has bee...

3 items in this pack

Comments: 0 | Viewed: 106 times | Downloaded: 48 times

Tags:
Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Integral Projection Models pack


Created: 2013-08-13 12:51:30 | Last updated: 2015-06-12 13:48:44

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Integral Projection Model (IPM) Workflow provides an environment for create an integral projection model and to calculate its population growth, structure, sensitivities and elasticities analyses, age-specific metrics, etc.Create an IPM with no density dependence and perform several analyses on it.Analyses:Lambda (λ).Sensitivity analysis.Elasticity analysis.Parameters elasticity and sensitivity o...

3 items in this pack

Comments: 0 | Viewed: 142 times | Downloaded: 56 times

Tags:
Creator
3194?size=60x60 Hu Ferenc HORVATH
Project Biovel
Show View Download Download

Pack Ecosystem modelling with Biome-BGC


Created: 2015-05-19 09:00:27 | Last updated: 2015-06-12 13:48:45

Brings together 5 workflows for ecosystem modelling and calculation of ecosystem service indicators. These workflows are developed around the Biome-BGC biogeochemical modelling software that simulates the storage and flux of water, carbon, and nitrogen between the ecosystem and the atmosphere, and within the components of the terrestrial ecosystems (Thornton, 2000).See descriptions of individual workflows for more details.The workflows in this pack have been created by the Biodiversity Virtua...

5 items in this pack

Comments: 0 | Viewed: 147 times | Downloaded: 39 times

Tags:
Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Relative importance of Chinook salmon abundance on r...


Created: 2014-08-29 11:04:10 | Last updated: 2014-09-30 09:35:02

The pack contains three workflows, 13 files and 2 documentations (tutorials to run the workflows).Workflows:1) Demography of the killer whales.2) Resident killer whale-chinook salmon interactions.3) Exploration of fishing scenarios.These workflow uses input data of two different populations of Orcas in the northeastern Pacific Ocean of Canada and the U.S. But these workflows can also use input data from other populations of the Orcas in the world (see requirements for data entry in the docume...

19 items in this pack

Comments: 0 | Viewed: 97 times | Downloaded: 35 times

Tags:
Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Elasticity and Sensitivity of the vital rates pack


Created: 2014-08-28 08:56:24 | Last updated: 2014-08-29 14:50:26

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow calculate the Elasticity and Sensitivity of the vital rates. The goal in both cases is to determine which vital rates have the most influence on population growth or λ.

3 items in this pack

Comments: 0 | Viewed: 67 times | Downloaded: 40 times

Tags:
Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Calculate and Plot abundance over the years pack


Created: 2014-08-22 07:50:23 | Last updated: 2014-08-28 13:17:48

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow calculates and plots the abundance per stage per year from a list of matrices.

3 items in this pack

Comments: 0 | Viewed: 61 times | Downloaded: 28 times

Tags:
Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Variance matrix pack


Created: 2014-08-21 13:07:20 | Last updated: 2014-08-28 13:53:33

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow estimates the variance matrix from a list of matrices.

8 items in this pack

Comments: 0 | Viewed: 51 times | Downloaded: 24 times

Tags:
Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Log-log plots of variance vs. sensitivity and CV vs....


Created: 2014-08-13 10:27:13 | Last updated: 2014-08-21 09:16:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow creates log-log plots of both variance vs. sensitivity and CV vs. elasticity in matrix elements. Plots are based on Figure 2 in Pfister (1998).

8 items in this pack

Comments: 0 | Viewed: 49 times | Downloaded: 20 times

Tags:
Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
Show View Download Download

Pack Mean matrix pack


Created: 2014-07-31 13:34:16 | Last updated: 2014-08-14 17:52:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This mean matrix workflow estimates the mean matrix from a list of matrices.

8 items in this pack

Comments: 0 | Viewed: 58 times | Downloaded: 26 times

Tags:
Results per page:
Sort by:
Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
About | Privacy | Publications | Contact / Feedback | Mailing List
Icons: Silk icon set 1.3

Copyright © 2007 – 2018 The University of Manchester and University of Southampton