Content from the BioVeL group

Integral Projection Model for Demographic ... (1)

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This workflow constructs and analyses an IPM with only continuous stages and without ramet production based on the IPMpack (R). Information about the Input file: The data must be organized in a table (in .csv format), where each row represents one observation of an organism in the population at one census time t with the following column names: size: size of individuals in census time t sizeNext: size of individuals in census time t +1 surv: survival of individuals from census time t to t...

Created: 2013-08-13

Credits: Maria Paula Balcazar-Vargas Jon Giddy Gerard Oostermeijer

Matrix Population Model analysis v12 (2)

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The Matrix Population Models Workflow provides an environment to perform several analyses on a stage-matrix with no density dependence: - Eigen analysis; - Age specific survival; - Generation time (T); - Net reproductive rate (Ro); - Transient Dynamics; - Bootstrap of observed census transitions (Confidence intervals of lambda); - Survival curve; - Keyfitz delta; - Cohen's cumulative distance. This workflow requires an instance of Rserve on localhost This workflow has been created by the Bi...

Created: 2013-08-13 | Last updated: 2014-07-09

Credits: Maria Paula Balcazar-Vargas Jon Giddy Gerard Oostermeijer

Attributions: Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Eigen analysis Age specific analysis Transient Dynamics. Generation time (T) Net reproductive rate (Ro) Demographic data Gentiana pneumonanthe 1987-1988 from Terschelling File.

Matrix Population Model construction and a... (3)

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The Matrix Population Models Workflow provides an environment to create stage-matrices with no density dependence and to perform several analyses on them: - Eigen analysis; - Age specific survival; - Generation time (T); - Net reproductive rate (Ro); - Transient Dynamics; - Bootstrap of observed census transitions (Confidence intervals of lambda); - Survival curve; - Keyfitz delta; - Cohen's cumulative distance. If multiple year transitions are selected, the results will be ordered by year. ...

Created: 2013-08-13 | Last updated: 2014-07-04

Credits: Maria Paula Balcazar-Vargas Jon Giddy Gerard Oostermeijer

Attributions: Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Matrix Population Model construction and analysis Eigen analysis Age specific analysis Transient Dynamics. Generation time (T) Net reproductive rate (Ro) Bootstrap of observed census transitions. Demographic data Gentiana pneumonanthe 1987-1988 from Terschelling File.

BioSTIF Interaction Rastermask (2)

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The Rastermask interaction allows to create a mask from a geiven extent and resolution and store it to the Geoserver for futher computations.This version includes a check if the mask is created when the "continue" button is pushed. The task=createmask parameter must be set to get the check.

Created: 2013-05-13 | Last updated: 2014-09-17

Credits: Robert Kulawik

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Analysis of environmental sequences

Created: 2013-05-07 09:07:57 | Last updated: 2013-05-07 12:14:57

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Perform Short Bayesian Phylogenetic Inference

Created: 2013-02-20 15:07:21 | Last updated: 2013-08-21 16:09:33

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-06-13

Credits: Saverio Vicario Bachirb Giacinto Donvito