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Saverio Vicario
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Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Partitioning environmental sequencing data... (5)

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Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH . The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are grouped using a categorical variable. The WF gives back a tabular and graphical representation of an entropy based partitioning of the information present in the sequence across the groupings, and ...

Created: 2013-05-07 | Last updated: 2015-06-12

Credits: User Saverio Vicario

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Partitioning environmental sequencing data... (3)

Thumb
Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH . The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are grouped using a categorical variable. The WF gives back a tabular and graphical representation of an entropy based partitioning of the information present in the sequence across the groupings, and ...

Created: 2013-05-07 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Infererence: Input R... (3)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Infererence: Evaluat... (7)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Creator
3375?size=60x60 It Saverio Vicario
Project Biovel
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Pack Analysis of environmental sequences


Created: 2013-05-07 09:07:57 | Last updated: 2013-05-07 12:14:57

The pack should allow to analysis the differentiation across groups of samples of biological sequence

2 items in this pack

Comments: 0 | Viewed: 43 times | Downloaded: 17 times

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3375?size=60x60 It Saverio Vicario
Project Biovel
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Pack Perform Short Bayesian Phylogenetic Inference


Created: 2013-02-20 15:07:21 | Last updated: 2013-08-21 16:09:33

The Pack contain 3 workflows that perform and validate bayesian phylogenetic inference that differ from the kind of input. The pack is called short because the worlflow require that the user need to keep taverna engine always on for the the time of the analysis. This could be quite problematic for large analysis. In this case search help in the "Perform Long Bayesian Phylogenetic Inference" packIn this pack there are 3 workflows:1) User locally formatted input file (for details in n...

3 items in this pack

Comments: 0 | Viewed: 88 times | Downloaded: 18 times

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Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Inference: Select Mo... (3)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-07-04

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Select Model (12)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-06-13

Credits: User Saverio Vicario User Bachirb User Giacinto Donvito

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Inference: Select Mo... (4)

Thumb
BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-07-04

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Input Ready (8)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-04-13

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

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Funded by: BioVeL, EPSRC, JISC, Microsoft

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