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Paul Fisher

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Schema for flat file cross-referencing

Created: 2011-03-23 17:00:58 | Last updated: 2011-03-23 17:01:01

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This powerpoint slide shows the how data in each flat file can be cross-reference to other flat file data items.

File type: PowerPoint presentation

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Paul Fisher

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XML Result from Pubmed Search

Created: 2011-03-23 11:49:33 | Last updated: 2011-03-23 11:49:36

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This xml file conatins results from a pubmed search for 'Blood Clotting'.

File type: XML

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John Brookes

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Simulation results

Created: 2011-03-23 09:52:21 | Last updated: 2011-03-23 09:52:24

Credits: John Brookes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Results from the circle drawing functions RTL simulation.

File type: Trident (Package)

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Paul Fisher

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Bilateral Perisylvian Polymicrogyria - Single Nucleo...

Created: 2011-03-17 11:21:06 | Last updated: 2011-03-17 11:21:12

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of all the SNP found with the Villard et al., (2002) QTL for Bilateral Perisylvian Polymicrogyria. Please download this data as you wish, and use in whatever study you like. The data is open access, and freely available for all to use to help undertand this condition. Genes related to these SNP can be found in the file http://www.myexperiment.org/files/466.

File type: ZIP archive

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Paul Fisher

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Bilateral Perisylvian Polymicrogyria

Created: 2011-03-17 10:56:15 | Last updated: 2011-03-17 11:16:53

Credits: Paul Fisher

Attributions: Pathway and Gene to Pubmed Pathways and Gene annotations forQTL region

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of running a QTL workflow for Bilateral Perisylvian Polymicrogyria in human (homo sapiens). Provided are a list of candidate QTL genes (QTg) and their corresponding KEGG pathways. Each gene and pathway have been subsequently run through a series of text mining workflows to determine the significance each may play in relation to Bilateral Perisylvian Polymicrogyria. If you want to help me identify candidate genes for this disorder, please get i...

File type: ZIP archive

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bilateral perisylvian polymicrogyria
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cosine vector space
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data integration
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data-driven
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enrichment
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entity recognition
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epilepsy
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gene
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homo sapiens
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human
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Kegg Pathways
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pathways
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phenotype
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pubmed
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qtl
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quanitative
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region
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text mining
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text mining; term extraction; entity recognition

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David De Roure

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Output from workflow 1943 on 2011-03-13 in CSV format

Created: 2011-03-13 11:31:21

Credits: David De Roure

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Output from http://www.myexperiment.org/workflows/1943 executed on 2011-03-13

File type: text/csv

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This File has no tags!

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Marie Brown

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Automated Workflows for Accurate Mass-based Putative...

Created: 2011-03-03 15:27:04 | Last updated: 2011-03-03 15:27:07

Credits: Marie Brown

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

Three workflows, together defined as PUTMEDID-LCMS, have been developed using the open source Taverna environment to perform putative metabolite identification based on accurate mass data acquired from liquid chromatography-electrospray mass spectrometry instruments. Three workflows perform the following steps. (Step 1) Generation of a list of pairwise peak correlations required for input to workflow 2 (workflow 1) (Step 2) Annotation of features to group different ion types of the same metab...

File type: application/x-zip-compressed

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John Brookes

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SVN commands for linux

Created: 2011-02-25 13:12:12 | Last updated: 2011-02-25 13:12:13

Credits: John Brookes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

SVN commands for linux - basic operation only

File type: Adobe PDF

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svn

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Paul Fisher

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Trichuriasis Induced Colitis

Created: 2011-02-16 15:16:17 | Last updated: 2011-02-16 15:16:24

Credits: Paul Fisher

Attributions: Pathways and Gene annotations for RefSeq ids KEGG pathways common to both QTL and microarray based investigations Pathways and Gene annotations for QTL region Pathway and Gene to Pubmed

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of workflow runs for: identifying genes in each of the 7 QTL regions for Trichuris muris infection; identifying genes differentially expressed in mice challenged with Trichuris muris; and Text mining results (including cosine vector scores and Term Enrichment values).

File type: Trident (Package)

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