All content

Load affymetrix experiments results into S... (1)

• Download

The affymetrix data source is not public.

Created: 2009-02-17

Credits: Francois Belleau

Initialize triplestore with Murin's protoc... (1)

• Download

This workflow initialize the Sesame triplestore with initial data.  The 5 rdfiser in JSP are needed, they are executed on localhost.

Created: 2009-02-17 | Last updated: 2009-02-17

Credits: Francois Belleau

Pubmed mashup demo in a Virtuoso triplestore (1)

• Download

This workflow build a mashup in your local virtuoso server (available at http://localhost:8890/sparql) by downloading the needed pubmed documents from NCBI and by converting them into N3 format.  Once all documents loaded into the triplestore you can query them with SPARQL. For example try those queries : SELECT count(*) WHERE {?s ?p ?o} SELECT ?o, count(*) WHERE {?s <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> ?o} Dr Labrie's MeSH subject of interest : SELECT ?o, count...

Created: 2009-02-11

Credits: Francois Belleau

Rich Get Richer (1)

• Download

This workflow is a replication of the analysis from an OSCon 2004 presentation by Megan Conklin, entitled "Do the Rich Get Richer?" to demonstrate scale-free distribution of FLOSS developers among projects. The workflow retrieves the current number of active developers (for the most recent calculation of said statistic) from the FLOSSmole database. It summarizes and plots the distribution of developers to projects, on both a straight and log-log scale. It also generates a flat list of the de...

Created: 2009-02-05

Credits: Andrea Wiggins

Workflow Pattern - Cancelling Discriminator (1)

• Download

This workflow is a GWorkflowDL representation of a cancelling discriminator that cancels the invocation of B if A has been executed and vice versa. This is only one out of various possibilities to model this workflow pattern. Please regard that this workflow example uses a separate method for cancelling the invocation of the activity. This is very useful if the invocation of the activity is done asynchronously as it is often implemented for long running methods. It may be necessary to propag...

Created: 2009-01-06

Credits: Andreas Hoheisel

View Download

Test Input for Mapping oligonucleotides to an assembly

Created: 2008-12-11 12:06:36 | Last updated: 2008-12-11 12:21:53

Credits: Wassinki

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 811 times | Downloaded: 48 times

View Download

Input for Mapping oligonucleotides to an assembly

Created: 2008-12-11 12:04:22 | Last updated: 2008-12-11 12:21:40

Credits: Wassinki

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 89 times | Downloaded: 32 times

This File has no tags!

caDSR metadata query in caGrid (1)

• Download

This workflow shows the coordinated use of two services in CaGrid, i.e., the caDSR (Cancer Data Standards Repository) and EVS (Enterprise Vocabulary Services) services. caDSR is to define a comprehensive set of standardized metadata descriptors for cancer research terminology used in information collection and analysis. EVS provides resources and services to meet NCI needs for controlled terminology, and to facilitate the standardization of terminology and information systems across the Insti...

Created: 2008-12-05 | Last updated: 2008-12-05

Credits: Wei Tan

Affimetrix microarray: part three (concat) (1)

• Download

Collecting the results from the perumtation.

Created: 2008-12-05

Credits: Zhiming Zhao

Affimetrix microarray: part one (obs) (1)

• Download

The R/MAANOVA package [1] is being adapted to carry out our computations. To enable R/MAANOVA to handle probe-sets with different probe numbers, which is necessary when using probe-set definitions other than the original one provided by Affimetrix, we will pre-process the input data by dividing it into groups, each group formed by genes reported by the same number of probes.

Created: 2008-12-05

Credits: Zhiming Zhao