Load affymetrix experiments results into Sesame triplestore for a specific tissue
Created: 2009-02-17 04:54:30
The affymetrix data source is not public.
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Workflow Components
Authors (0)
Titles (0)
Descriptions (0)
Dependencies (0)
Processors (9)
Name |
Type |
Description |
Build_url_for_get_or_count |
beanshell |
Scripturl = "http://localhost/murin/murin-results2n3.jsp?level=" + level + "&id=" + experiment_id;
//url = "http://localhost/murin/murin-results-count2n3.jsp?level=" + level + "&id=" + experiment_id; |
levels_1.5_4 |
stringconstant |
Value1.5,2,4 |
Sesame_upload |
workflow |
|
repository |
stringconstant |
Valuenative-rdf-db3 |
uterus_experiments |
stringconstant |
Value2,28,37,58 |
Split_string_into_string_list |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = ",";
if (regex != void) {
regexString = regex;
}
String[] result = string.split(regexString);
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
}
|
Split_string_into_string_list_2 |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = ",";
if (regex != void) {
regexString = regex;
}
String[] result = string.split(regexString);
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
}
|
ntriples |
stringconstant |
Valuentriples |
levels_0.5_4 |
stringconstant |
Value0.5,1,1.5,2,4 |
Beanshells (5)
Name |
Description |
Inputs |
Outputs |
Build_url_for_get_or_count |
|
experiment_id
level
|
url
|
Sesame_upload_url |
|
url
repository
input_format
|
html
|
Split_string_into_string_list |
|
string
|
split
|
Filter_list_of_strings_extracting_msg |
|
stringlist
|
filteredlist
|
Concatenate_two_strings |
|
string1
string2
|
output
|
Outputs (4)
Name |
Description |
o2 |
|
o3 |
|
responses |
|
o1 |
|
Datalinks (11)
Source |
Sink |
Split_string_into_string_list:split |
Build_url_for_get_or_count:experiment_id |
Split_string_into_string_list_2:split |
Build_url_for_get_or_count:level |
Build_url_for_get_or_count:url |
Sesame_upload:url |
repository:value |
Sesame_upload:repository |
ntriples:value |
Sesame_upload:ntriples_or_rdfxml |
uterus_experiments:value |
Split_string_into_string_list:string |
levels_1.5_4:value |
Split_string_into_string_list_2:string |
Split_string_into_string_list_2:split |
o2 |
Build_url_for_get_or_count:url |
o3 |
Sesame_upload:number_of_uploaded_triples |
responses |
Split_string_into_string_list:split |
o1 |
Uploader
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licensed under:
Version 1
(of 1)
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