myExperiment - Content

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Katy Wolstencroft

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Bonn Tutorial REST services

Created: 2012-09-03 19:34:12

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a brief introduction to using REST servicces through Taverna

File type: PowerPoint presentation

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Katy Wolstencroft

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Bonn Tutorial Different Service Types

Created: 2012-09-03 19:32:32

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thie tutorial introduces you to using different types of services with Taverna - e.g. asynchronous, biomart and soaplab

File type: PowerPoint presentation

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Taverna 2

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Anja Le Blanc

Associate Active Regions and Filaments to ... (1)

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This workflow is querying the HEC for the fastest 100 CME of a given list (input parameter); it calculates the latitude from the postion angle; last step is to query the HFC for Active Regions and Filaments for the given time where the bounding box of the feature contains the longitude (feature must be on the correct side of the Sun.) Inputs: HEC list name (must contain fields: v, time_start, pa_width, pa) Outputs: v, time_start, pa_width, pa of the 100 fastest CME, VOTables for associated A...

Created: 2012-09-03

Credits: Anja Le Blanc

Taverna 2

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Magnus Palmblad

Retention Time Prediction with X!Tandem (1)

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This workflow identifies peptides from tandem mass spectra using X!Tandem as in a standard installation of the Trans-Proteomic Pipeline (TPP, version 4.6, but earlier versions should also work). The peptide-spectrum matches are validates using PeptideProphet (also from a standard installation of TPP) and peptides with at least a probability 0.95 are used to train a linear retention time predictor (Palmblad et al., 2002), whereby retention coefficients are also derived. These indirectly provid...

Created: 2012-09-03 | Last updated: 2012-09-03

Credits: Magnus Palmblad Yassene Eleni

Attributions: rt3.c

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Magnus Palmblad

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rt3.c

Created: 2012-09-03 10:36:54 | Last updated: 2012-09-03 10:42:13

Credits: Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Linear retention time prediction training rt, version 3.0 with improved command-line interface and format options.

File type: Trident (Package)

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Taverna 2

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Julian Garrido

Get completion function V / Vm using the a... (1)

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Get completion function V / Vm using the apparent magnitude list of a set of galaxies

Created: 2012-09-03 | Last updated: 2012-09-03

Credits: Julian Garrido

BioExtract Server

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Carol Lushbough

NCBI Protein Clustal Omega Alignment (1)

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Searches NCBI Proteins for a given organism and protein. User VMatch (xmknr) Vmatch, a versatile software tool for efficiently solving large scale sequence matching tasks to remove possible dubplcate and clustal omega to generate a multiple sequence alignment. Clustal Omega is the latest addition to the Clustal family. It offers a significant increase in scalability over previous versions, allowing hundreds of thousands of sequences to be aligned in only a few hours. It will also make u...