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Showing 2916 results. Use the filters on the left and the search box below to refine the results.
Taverna 1
Uploader
120?size=60x60 Ie Niall Haslam

Workflow GlobPlotExample (1)

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This is a sample for how to get the new GlobPlot native disorder and globularity prediction webservice working. At the moment it seems you need all the parameters - even the optional ones filled in, to work in taverna.

Created: 2008-04-30 | Last updated: 2008-04-30

Credits: User Niall Haslam

Taverna 1
Uploader
25?size=60x60 England David Withers

Workflow Html output test (1)

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Workflow for testing the html rendering on myExperiment

Created: 2008-03-04 | Last updated: 2008-09-08

Credits: User David Withers

Galaxy
Uploader
Avatar Chris

Workflow AmrPlusPlus Paired Workflow (9)

AmrPlusPlus is a Galaxy-based metagenomics pipeline that is intuitive and easy to use. The pipeline takes advantage of current and new tools to help identify and characterize resistance genes from metagenomic sequence data.

Created: 2016-08-05 | Last updated: 2016-11-18

Credits: User Chris

KNIME
Uploader
4267?size=60x60 Barbara Zdrazil

Workflow Use Case B, KNIME workflow (1)

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Workflow used to obtain data for the research paper ‘The application of the Open Pharmacological Concepts Triple Store (Open PHACTS) to support Drug Discovery Research’, PLoS One. 2014 Dec 18; 9(12):e115460. PMID: 25522365; authored by Joseline Ratnam, Barbara Zdrazil, Daniela Digles, Cuadrado-Rodriguez E, et al. This workflow can be used to retrieve data and perform the analysis described in use case BRequirements:- Knime v2.9- Open PHACTS Knime nodes version 1.0.0 (DON'...

Created: 2014-11-20 | Last updated: 2015-11-03

Credits: User Barbara Zdrazil User Emiliano Cuadrado User Daniela Digles User Lars Richter Network-member Open PHACTS

KNIME
Uploader
Avatar Au sauberns

Workflow Indigo-pains-recursive (2)

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*** Update 20151130 - using KNIME 3 nodes and the 'RDKit' version of PAINS queries ***The old Indigo library (1.1.13) could not take advantage of the parallelizing nodes in KNIME the way the RDKit library could. One way to speed up the PAINS workflow when using the Indigo library was to use a recursive loop that constantly shrank the list of structures being presented to the next PAINS query as structures were knocked out of the main list.Using the WEHI-10k reference set (embedded in ...

Created: 2013-08-13 | Last updated: 2015-12-01

Credits: User sauberns

Attributions: Workflow Indigo-pains Workflow RDKit-pains-parallel

Taverna 2
Uploader
3194?size=60x60 Hu Ferenc HORVATH
Project Biovel

Workflow Biome-BGC ESI version 1.4.1 (3)

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Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water fluxes of different terrestrial ecosystems. The model can help us to quantify a broad range of ecosystem service indicators. These newly developed measures include: annual wood increment, yearly production of grasslands or croplands, total average carbon stock, annual evapotranspiration, damping of ecosystem daily water outflow, living and dead biomass protecting the soil against erosion,...

Created: 2013-08-12 | Last updated: 2014-10-04

Credits: User Ferenc HORVATH User Dora Krasser User Peter Ittzes Network-member BioVeL

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Partitioning environmental sequencing data... (5)

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Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH . The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are grouped using a categorical variable. The WF gives back a tabular and graphical representation of an entropy based partitioning of the information present in the sequence across the groupings, and ...

Created: 2013-05-07 | Last updated: 2015-06-12

Credits: User Saverio Vicario

Taverna 2
Uploader
4196?size=60x60 Biodiversity eLaboratory
Project Biovel

Workflow Matrix Population Model construction and a... (2)

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This workflow is deprecated. To obtain a more recent version of this workflow, please refer to: http://www.myexperiment.org/packs/483.html For historic access to this workflow, please view an earlier version.

Created: 2012-11-02 | Last updated: 2014-09-17

Credits: User Jon Giddy User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

Taverna 2
Uploader
4196?size=60x60 Biodiversity eLaboratory
Project Biovel

Workflow Matrix Population Model construction and a... (3)

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This workflow is deprecated. To obtain a more recent version of this workflow, please refer to: http://www.myexperiment.org/packs/483.html For historic access to this workflow, please view an earlier version.

Created: 2012-11-02 | Last updated: 2014-09-17

Credits: User Jon Giddy User Gerard Oostermeijer User Maria Paula Balcazar-Vargas

RapidMiner
Uploader
2640?size=60x60 Pl Mikolaj Morzy

Workflow Uczenie z macierza kosztow (1)

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Przeplyw pokazuje wykorzystanie operatora MetaCost, umozliwiajacego wprowadzenie macierzy kosztow do procesu uczenia klasyfikatora na przykladzie naiwnego klasyfikatora Bayesa.

Created: 2011-05-25 | Last updated: 2014-03-23

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Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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