Workflows

Get Bioentity from Organism (1)

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GeNS workflow that lists the identifiers corresponding to a given species and data type. For instance, list all OMIM associated with the human species. Disclaimer: This workflow is just a simple example designed for academic purposes.

Created: 2009-09-08 | Last updated: 2009-09-14

Credits: Pedro Lopes

Sample Entity Converter (1)

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 Disclaimer: This workflow is just a simple example designed for academic purposes.

Created: 2009-09-08 | Last updated: 2009-09-14

Credits: Pedro Lopes

Workflow for provenance testing -- example 1 (1)

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this simply includes a few beanshells and is used for testing our provenance capture and query algorithms

Created: 2009-09-10

Credits: Paolo

example of a 2-deep nested workflow (1)

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used for testing provenance as well as experimenting with Scufl2 specfications

Created: 2009-09-11

Credits: Paolo

EBI_InterProScan_T2 (1)

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Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the s...

Created: 2009-09-11

Credits: Steve Crouch Stian Soiland-Reyes

Search GeNS BioEntity (1)

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 This workflow returns a list of know associations between an organism and a data type. All identifiers correspond to GeNS database identifiers.    Disclaimer: This workflow is just a simple example designed for academic purposes.

Created: 2009-09-15 | Last updated: 2009-09-15

Credits: Pedro Lopes

Search GeNS DataType (1)

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 This workflow returns a single GeNS identifier corresponding to the given data type.    Disclaimer: This workflow is just a simple example designed for academic purposes.

Created: 2009-09-15

Credits: Pedro Lopes

Search GeNS Organism (1)

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 This workflow returns a GeNS identifier for a given organism.    Disclaimer: This workflow is just a simple example designed for academic purposes.

Created: 2009-09-15

Credits: Pedro Lopes

BioMart and Emboss Analysis (T2) (1)

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This is the Taverna 2 version of the Biomart and Emboss Analysis workflow http://www.myexperiment.org/workflows/158   Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned. Previous versions of this workflow only returned sequences with an ID mapped to a MIM_morbid_accession. This was primarily to reduce the numbe...

Created: 2009-09-15

Credits: Katy Wolstencroft Alan Williams

Attributions: BiomartAndEMBOSSAnalysis

Example 3 (1)

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Search in the Datenbank SWISS the Sequence 1220173

Created: 2009-10-20

Credits: Ruben