BiomartAndEMBOSSAnalysisoutputPlotHSapIDsMMusIDsRNorIDsGetUniqueHomologHSGeneIDs1MouseGeneIDs1RatGeneIDs1RatOut11HSOut11MouseOut11net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true HSGeneIDs 1 l('text/plain') java.lang.String true MouseGeneIDs 1 l('text/plain') java.lang.String true RatGeneIDs 1 l('text/plain') 1 HSOut 1 l('text/plain') 1 RatOut 1 l('text/plain') 1 MouseOut 1 l('text/plain') net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCreateFastammSeq0hsSeq0rnSeq0fasta00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true hsSeq 0 'text/plain' java.lang.String true mmSeq 0 'text/plain' java.lang.String true rnSeq 0 'text/plain' 0 fasta 0 'text/plain' net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlattenImageListinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity workflow [B true inputlist 2 l(l('')) 1 outputlist 1 l('') net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeplotsequences_direct_data0report00Graphics_in_Postscript00Graphics_in_PNG_url00Graphics_in_PNG11Graphics_in_Postscript_url00net.sf.taverna.t2.activitiessoaplab-activity0.8net.sf.taverna.t2.activities.soaplab.SoaplabActivity http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot 0 1.0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 5 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeemmasequence_direct_data0outseq00dendoutfile_url00report00outseq_url00dendoutfile00net.sf.taverna.t2.activitiessoaplab-activity0.8net.sf.taverna.t2.activities.soaplab.SoaplabActivity http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma 0 1.0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 5 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeseqretsequence_direct_data0report00outseq_url00outseq00net.sf.taverna.t2.activitiessoaplab-activity0.8net.sf.taverna.t2.activities.soaplab.SoaplabActivity http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret 0 1.0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 5 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehsapiens_gene_ensemblhsapiens_gene_ensembl.ensembl_gene_id10hsapiens_gene_ensembl.mouse_ensembl_gene10hsapiens_gene_ensembl.rat_ensembl_gene10net.sf.taverna.t2.activitiesbiomart-activity0.8net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetMMusSequencemmusculus_gene_ensembl.ensembl_gene_id_filter1mmusculus_gene_ensembl.coding_gene_flank10net.sf.taverna.t2.activitiesbiomart-activity0.8net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetHSapSequencehsapiens_gene_ensembl.ensembl_gene_id_filter1hsapiens_gene_ensembl.coding_gene_flank10net.sf.taverna.t2.activitiesbiomart-activity0.8net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetRNorSequencernorvegicus_gene_ensembl.ensembl_gene_id_filter1rnorvegicus_gene_ensembl.coding_gene_flank10net.sf.taverna.t2.activitiesbiomart-activity0.8net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetUniqueHomologHSGeneIDshsapiens_gene_ensemblhsapiens_gene_ensembl.ensembl_gene_idGetUniqueHomologMouseGeneIDshsapiens_gene_ensemblhsapiens_gene_ensembl.mouse_ensembl_geneGetUniqueHomologRatGeneIDshsapiens_gene_ensemblhsapiens_gene_ensembl.rat_ensembl_geneCreateFastammSeqgetMMusSequencemmusculus_gene_ensembl.coding_gene_flankCreateFastahsSeqgetHSapSequencehsapiens_gene_ensembl.coding_gene_flankCreateFastarnSeqgetRNorSequencernorvegicus_gene_ensembl.coding_gene_flankFlattenImageListinputlistplotGraphics_in_PNGplotsequences_direct_dataemmaoutseqemmasequence_direct_dataseqretoutseqseqretsequence_direct_dataCreateFastafastagetMMusSequencemmusculus_gene_ensembl.ensembl_gene_id_filterGetUniqueHomologMouseOutgetHSapSequencehsapiens_gene_ensembl.ensembl_gene_id_filterGetUniqueHomologHSOutgetRNorSequencernorvegicus_gene_ensembl.ensembl_gene_id_filterGetUniqueHomologRatOutoutputPlotFlattenImageListoutputlistHSapIDsGetUniqueHomologHSOutMMusIDsGetUniqueHomologMouseOutRNorIDsGetUniqueHomologRatOut Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned. 2009-09-15 11:32:34.490 BST 2009-09-15 11:32:34.490 BST 2009-09-15 13:07:23.723 BST BiomartAndEMBOSSAnalysis 2009-09-15 11:32:34.490 BST