Workflows

Demo of statistics webservice invoked from... (1)

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Created: 2009-03-29

Credits: David De Roure

Workflow Pattern - Structured Discriminato... (1)

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This workflow is an alternative GWorkflowDL representation of a structured discriminator (1-out-of-M Join) that invokes C after the first invocation of A or B (M=2). All next (M-1) invocations of A or B are ignored. The pattern is resets if both, A and B have been invoked. Please note that the transitions "C", "ignore", and "release" have different priorities (not shown in the graph) that make the net deterministic (except the occurrence of "A" and &q...

Created: 2009-01-19 | Last updated: 2009-01-20

Credits: Andreas Hoheisel

Using CQL to query protein sequence data (1)

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To query protein sequence infomation out of 3 caGrid data services: caBIO, CPAS and GridPIR. Scientific value To query protein sequence information out of 3 caGrid data services: caBIO, CPAS and GridPIR. To analyze a protein sequence from different data sources. Steps Querying CPAS and get the id, name, value of the sequence. Querying caBIO and GridPIR using the id or name obtained from CPAS.    

Created: 2008-12-05 | Last updated: 2009-07-14

Credits: Wei Tan

Workflow Pattern - Simple Merge (XOR-Join) (1)

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This workflow is a GWorkflowDL representation of a simple merge (XOR Join) that invokes C when either A or B has been invoked. The structure of the GWorkflowDL representation of a simple merge is identical to the multi merge pattern!

Created: 2008-12-03 | Last updated: 2009-01-19

Credits: Andreas Hoheisel

Blast against ENSEMBLE Danio_rerio_Genome (1)

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This workflow invokes the blast service provided at www.bioinformatics.nl, written by Pieter Neerincx. The workflow takes as input a database name (Danio_rerio_Genome for Zebra Fish for example) and a set of sequences in fasta format. The blast service is invoked (using polling) and the result is a tab separated blast report.   To run this workflow, a certificate to access www.bioinformatics.nl needs to installed (Some services use an SSL connection). Look at the link below how to ins...

Created: 2008-10-15 | Last updated: 2008-10-15

Credits: Wassinki

EBI_Fetch_InterPro_Matches_UniParc (1)

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For a UniParc (see http://www.ebi.ac.uk/uniprot/database/DBDescription.html#uniparc) identifier/accession fetch the assocated InterPro Matches from SRS@EBI (see http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+LibInfo+-lib+IPRMC_UNIPARC).

Created: 2008-06-08

Credits: Hamish McWilliam

selectworker (1)

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This workflow shows how the selectData beanshell script can be used to select items from a given list for analysis by downstream processors. Use Control and left mouse click to select multiple items.

Created: 2008-03-25 | Last updated: 2008-03-25

Credits: Peter Li

GeneIlluminator_GetPubMedQuery (2)

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Example workflow demonstrating how to use GeneIlluminator_GetPubMedQuery, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service uses GeneIlluminator to create clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. GeneIlluminator provides also aliases associated to the input gene symbol. Finally, using the cluster characteristics it creates a boolean PubMed query that could be used to...

Created: 2008-02-27 | Last updated: 2008-03-03

Credits: Pieter Neerincx Alako

GeneIlluminator_Disambiguate (2)

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Example workflow demonstrating how to use GeneIlluminator_Disambiguate, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service provides GI_Clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. Provides also gene symbol aliases associated to the input gene symbol. (This is the same output as the one from the GeneIlluminator_GetClusters service.) In addition this service takes an Organi...

Created: 2008-02-27 | Last updated: 2008-03-03

Credits: Pieter Neerincx Alako

ExampleWorkflow1 (2)

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This workflow was created based on the Leeds Taverna Workshop 2008-02-04 material developed by Katy.

Created: 2008-02-04 | Last updated: 2008-02-04

Credits: Katy Wolstencroft