Workflows

RCOMM 2012 Sudoku Challenge: 1 - Generate ... (1)

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Process from the http://rcomm2012.org live data mining challenge. The task was to partially solve a Sudoku puzzle by solving three subtasks. Processes 1-3 in this pack are the actual solutions to the tasks, process 0 loads the required data into your repository and process 4 is the bonus that solves the entire puzzle. This process loads the numbers 1..9 and uses two Cartesian Product operators to compute the set of all combinations x, y, v. Finally we compute the index of the 3x3 sub-field a...

Created: 2012-09-04

RCOMM 2012 Sudoku Challenge: 0 - Get Data (1)

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Process from the http://rcomm2012.org live data mining challenge. The task was to partially solve a Sudoku puzzle by solving three subtasks. Processes 1-3 in this pack are the solutions to the actual tasks, process 0 loads the required data into your repository and process 4 is the bonus that solves the entire puzzle. This process loads the two required data sets from rapid-i.com and stores them in your repository. The first data set contains the numbers 1 to 9 and the second contains the pr...

Created: 2012-09-04

Associate Active Regions and Filaments to ... (1)

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This workflow is querying the HEC for the fastest 100 CME of a given list (input parameter); it calculates the latitude from the postion angle; last step is to query the HFC for Active Regions and Filaments for the given time where the bounding box of the feature contains the longitude (feature must be on the correct side of the Sun.) Inputs: HEC list name (must contain fields: v, time_start, pa_width, pa) Outputs: v, time_start, pa_width, pa of the 100 fastest CME, VOTables for associated A...

Created: 2012-09-03

Credits: Anja Le Blanc

Retention Time Prediction with X!Tandem (1)

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This workflow identifies peptides from tandem mass spectra using X!Tandem as in a standard installation of the Trans-Proteomic Pipeline (TPP, version 4.6, but earlier versions should also work). The peptide-spectrum matches are validates using PeptideProphet (also from a standard installation of TPP) and peptides with at least a probability 0.95 are used to train a linear retention time predictor (Palmblad et al., 2002), whereby retention coefficients are also derived. These indirectly provid...

Created: 2012-09-03 | Last updated: 2012-09-03

Credits: Magnus Palmblad Yassene Eleni

Attributions: rt3.c

Get completion function V / Vm using the a... (1)

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Get completion function V / Vm using the apparent magnitude list of a set of galaxies

Created: 2012-09-03 | Last updated: 2012-09-03

Credits: Julian Garrido

NCBI Protein Clustal Omega Alignment (1)

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Searches NCBI Proteins for a given organism and protein. User VMatch (xmknr) Vmatch, a versatile software tool for efficiently solving large scale sequence matching tasks to remove possible dubplcate and clustal omega to generate a multiple sequence alignment. Clustal Omega is the latest addition to the Clustal family. It offers a significant increase in scalability over previous versions, allowing hundreds of thousands of sequences to be aligned in only a few hours. It will also make u...

Created: 2012-08-31

Credits: Carol Lushbough

Cocatenates several VOTables into one (3)

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Snippet showing how to use AstroTaverna tool for concatenating several VOTables. The input is four VOTables with the same number of columns. The result if using sample values provided will be a four times vertically duplicated VOTable.

Created: 2012-08-30 | Last updated: 2013-04-22

Credits: Julian Garrido

Build plots from galfit and ellipse results (2)

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Build plots from galfit and ellipse results (http://www.myexperiment.org/workflows/3068.html, http://www.myexperiment.org/workflows/3052.html).

Created: 2012-08-30 | Last updated: 2012-09-07

Credits: Julian Garrido

Add columns to a votable resulting from ex... (1)

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Addcolumns that are needed to run galfit and ellipse. it requires columns coming from sextractor and the astrotaverna plugin.

Created: 2012-08-30

Credits: Julian Garrido

Sort 1000 fastest CMEs from a given list a... (1)

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The fastest 1000 CME of the input list are bined in categories by factor of 10 according to their pa_width value. List must contain fields v and pa_width. Output VOTable with the counts in the categories.

Created: 2012-08-30 | Last updated: 2012-08-30

Credits: Anja Le Blanc