Workflows

CDAW CME movie from date (1)

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generates the url for the input date to visualize CMEs and GOES xray light curve produced by CDAW at GSFC

Created: 2012-11-05

Credits: David PS

Attributions: HFC Synoptic map from date

HFC Synoptic map from date (1)

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query the HELIO Feature Catalogue, and retrieves the image with all the features catalgued for certain date.

Created: 2012-11-05

Credits: David PS

Mp3 To Wav Migrate QA CLI List Test (4)

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Migrates Mp3 files from input List to Wav files and performs QA. The QA steps include File Format Validation, Significant Property Comparison and migrationQA file content comparison (all CLI). As this is a Test workflow, the (very large) Wav files are deleted, and only the QA results and log files are saved for analysis. This workflow matches solution SO4 on the SCAPE opf wiki, see http://wiki.opf-labs.org/display/SP/SO4+Audio+mp3+to+wav+Migration+and+QA+Workflow

Created: 2012-11-05 | Last updated: 2012-11-13

Credits: Bolette Jurik

Measuring Cellular Respiration in Animals (1)

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 This is an incomplete workflow of an experiment designed to measure the cellular respiration of different animals under different conditions.

Created: 2012-10-31

Credits: dhefley

Cellular Respiration of Peas (1)

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  Does temperature influence the rate of cellular respiration?

Created: 2012-10-31 | Last updated: 2012-10-31

Credits: dhefley

Extract average Solar wind speed from ACE ... (1)

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It reads the data coming from a MDES (HELIO) query and calculates the average Solar Wind speed. Notice that it just works for ACE as other missions could have the columns in different order.

Created: 2012-10-30

Credits: Eoincar

Solar Wind properties and plot (1)

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Using HELIO-MDES this workflow provides some properties of the solar wind from an input date and a mission and the plot +/-1 day for context.

Created: 2012-10-25

Credits: David PS

Attributions: MDES simple execution

Back CIR-CME propagation model (1)

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With a observing time at an object and the type of PM that you want to run executes it and provides the plots and the time and longitude where it should be seen the origin of the event.

Created: 2012-10-24

Credits: David PS Anja Le Blanc

Attributions: CME backwards propagation Co-rotating Interaction Regions backwards propagation

Parameter-optimization-SVM-classifier-work... (1)

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Workflow with nested loops for SVM parameter optimization and model XValidation

Created: 2012-10-24

When do the Fastest type II CME should be ... (2)

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The fastest CME is found from an interval of time, and propagated to Earth, in two steps, first to obtain the Solar wind speed at Earth and then propagated again with a more reasonable CME speed. The output produces Min-Max ETAs for each object in the heliosphere and the plots of the final propagation model. This Workflow was produced as one of the challenges in the HELIO CDAW-IV hosted at TCD

Created: 2012-10-21 | Last updated: 2013-03-20

Credits: David PS Eoincar Gab Baptiste Cecconi Shanem Jbyrne Florian Mayer Natasha A lynnyk

Attributions: LASCO_CME_QUERY LASCO_CME_QUERY MDES simple execution timeToTimeRange Forward CME propagation model (SHEBA) - defined outputs When did the fastest type II CME happened? Goes Flare Check WF 100CME_task1 Extract average Solar wind speed from ACE data

Forward CME propagation model (SHEBA) - de... (1)

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Extract Objects, HitOrMiss, ETAs and plots for a selected run of the SHEBA forward CME.

Created: 2012-10-21

Credits: David PS

Attributions: CME backwards propagation

When did the fastest type II CME happened? (1)

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Simple query to the HELIO Event Catalogue to extract the start and end time of the fastest CME from the Wind Type II catalogue. Also it extracts the Xray Class from the flare associated to the CME

Created: 2012-10-21

Credits: David PS Eoincar

Attributions: Extract content of columns from VOTables

get_Disease_Id_by_Pathway (1)

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retrieve Disease Id related to a gien pathway in KEGG db

Created: 2012-10-19

Credits: Massimo La Rosa Antonino Fiannaca

Retrieve_Pubmed_Publication_by_kegg_pathwa... (1)

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This workflow shows in your browser pubmed articles related to input pathway

Created: 2012-10-18

Credits: Massimo La Rosa Antonino Fiannaca

APIS EPN-TAP Query (1)

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Use this workflow to query APIS (Auroral Planetary Imaging and Spectroscopy) using the EPN-TAP protocol.

Created: 2012-10-18

Credits: Baptiste Cecconi

DAE Random Image Selector (1)

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DAE Webservice providing n random images from a given data set. 

Created: 2012-10-16

Credits: Bart Lamiroy

NCC Image Binarization (1)

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Converts color or grayscale image to black-and-white. Winning contribution by the NCI/CADD group at the National Institutes of Health for the ICDAR 2011 Document Analysis Algorithm Contributions in End-to-End Applications Contest.

Created: 2012-10-16

Credits: Bart Lamiroy

NCC Document Layout Segmentation (1)

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Segments a black-and-white input image into text, line drawing and picture images. Contribution by the NCI/CADD group at the National Institutes of Health for the ICDAR 2011 Document Analysis Algorithm Contributions in End-to-End Applications Contest.

Created: 2012-10-16

Credits: Bart Lamiroy

Standford Named Entity Detection (1)

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 Elementary OCR workflow for execution on the on-line DAE platform. Takes a text file as input. Implements a Named entity detection algorithm by Jenny Finkel and Christopher Manning as described in Jenny Rose Finkel, Trond Grenager, and Christopher Manning. 2005. "Incorporating Non-local Information into Information Extraction Systems by Gibbs Sampling". Proceedings of the 43nd Annual Meeting of the Association for Computational Linguistics (ACL 2005), pp. 363-370. ...

Created: 2012-10-16

Credits: Bart Lamiroy

Convert (1)

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Elementary workflow for execution on the on-line DAE platform. Converts an input image into another format by using the ImageMagick "convert" program.

Created: 2012-10-16 | Last updated: 2012-10-16

Credits: Bart Lamiroy

Ocrad 0.19 Basic Workflow (1)

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Elementary OCR workflow for execution on the on-line DAE platform. Implement v0.19 of the ocrad OCR engine. (requires an PGM or PMB input image URL) 

Created: 2012-10-16 | Last updated: 2012-10-16

Credits: Bart Lamiroy

Tesseract 2.04 Basic Workflow (1)

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 Elementary workflow for execution on the on-line DAE platform. (requires an uncompressed tiff image URL as input or will fail otherwise)

Created: 2012-10-16

Credits: Bart Lamiroy

Keyword Extraction (1)

Perform keyword extraction using AlchemyAPI. See here for more information: http://www.alchemyapi.com/api/keyword/

Created: 2012-10-05 | Last updated: 2014-04-09

Credits: cneudecker

OpenCalais (1)

Perform various enrichments using the OpenCalais API. See here for more information: http://www.opencalais.com/about

Created: 2012-10-04

Credits: cneudecker

Concept Tagging (1)

Perform concept tagging using AlchemyAPI. See here for more information: http://www.alchemyapi.com/api/relation/

Created: 2012-10-04

Credits: cneudecker

Entity Extraction (1)

Perform entity extraction using AlchemyAPI. See here for more information: http://www.alchemyapi.com/api/entity/

Created: 2012-10-04

Credits: cneudecker

Sentiment Analysis (1)

Perform sentiment analysis using AlchemyAPI. See here for more information: http://www.alchemyapi.com/api/sentiment/

Created: 2012-10-04

Credits: cneudecker

Relation Extraction (1)

Perform relation extraction using AlchemyAPI. See here for more information: http://www.alchemyapi.com/api/relation/

Created: 2012-10-04 | Last updated: 2014-04-09

Credits: cneudecker

Matchbox Evaluation (1)

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Matchbox evaluation against ground truth. The evaluation process first creates the matchbox output and ground truth lists. It then counts each page tuple from the matchbox output that is in the ground truth as correctly identified tuple (true positive). Those that are not in the ground truth are counted as incorrectly identified tuples (false positives), and finally, those that are in the ground truth but not in the matchbox output are counted as missed tuples (false negatives). The precision...

Created: 2012-10-02 | Last updated: 2012-10-02

Credits: Sven

Choosing the best k value for the k-NN cla... (1)

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The process determines the best value for the parameter k for the k-NN classification of the Breast Cancer Wisconsin (Diagnostic) data set available in the UCI Machine Learning Repository. The optimal k is computed by using 10-fold cross-validation. (To get better results each cross-validation is repeated 10 times and the averages of the runs are considered.) Finally, a k-NN classifier is built and evaluated on the entire data set using the optimal k. During the process the resulting average ...

Created: 2012-09-28 | Last updated: 2012-09-28

A simple process that demonstrates how to ... (1)

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This simple RapidMiner process demonstrates how to use the Open File operator introduced in RapidMiner 5.2. In this example we use the operator to consume a data feed from the web.

Created: 2012-09-27

Querying SDSS DR8 to get magnitude properties (2)

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This workflow gets a VOTable with the RA and DEC among others values of a list of galaxies. The workflow queries the SDSS DR8 VO conesearch service, to extract the objID, specObjID, ra, dec, u, g, r, i, z.

Created: 2012-09-26 | Last updated: 2013-03-08

Credits: Susana

Searching for near galaxies in NED service (2)

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This workflow needs as input an ascii table with a list of galaxies. This table contains the PGC name of the galaxy, the CIG number, the radius of searching, Z1 and Z2. The workflow uses the radius, Z1, Z2 and the PGC name of the galaxy to query NED service and get the html with the list of companions. This html is parsed and it is built a VOTable with the RA, DEC, Magnitud, Redshift, Separation, Velocity of each companion.

Created: 2012-09-26 | Last updated: 2012-10-09

Credits: Susana

The title (1)

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The description. This could be quite long.

Created: 2012-09-26

Credits: Stian Soiland-Reyes

Merkel Government Statement Analysis (1)

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Calculates the 100 most important words of each governmental statement from chancellor Merkel based their log likelihood values (compared to all govermental statements from her). Check out the pack - http://www.myexperiment.org/packs/333.html to get the workflow with required text data.

Created: 2012-09-19 | Last updated: 2012-09-19

Credits: jhermes

STUDY OF QUANTIFICATION OF IMPURITIES AND ... (1)

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Created: 2012-09-16

Credits: Drkrishnasarmapathy

Filter concepts with profiles (4)

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Purpose: Filter a list of concept id(s) by returning only those with a concept profile in the database.

Created: 2012-09-14 | Last updated: 2014-07-14

Credits: Kristina Hettne Reinout van Schouwen Martijn Schuemie BioSemantics

Cloud Parallel Processing of Tandem Mass S... (1)

An advanced scientific workflow for searching LC−MS data using SpectraST on the cloud. Uploading the libraries is optimized to achieve better performance, which makes this workflow more suitable for processing mzXML spectra files from human samples, as the corresponding NIST library needed by SpectraST is larger than 2 GB. Here we connect 3 nested workflows, in which the first 2, i.e., decomposeMzxml and uploadToCloud, run in parallel, while the third nested workflow, i.e. runSpectrastO...

Created: 2012-09-10 | Last updated: 2015-08-19

Credits: Yassene

Cloud Parallel Processing of Tandem Mass S... (1)

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A workflow for searching LC−MS/MS data using SpectraST on the cloud. The processor mzxmlDecomposer, pepxmlUnzip, and pepxmlComposer are identical to the one in the X!Tandem workflow (Figure 2). The only difference is that the Xtandem processor is exchanged with the Spectrast processor and the constant inputs are adjusted to SpectraST. This approach is also possible for other search engines as described in Data Decomposition and Recomposition Algorithms. More details can be found here:...

Created: 2012-09-10

Credits: Yassene

Cloud Parallel Processing of Tandem Mass S... (1)

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A workflow for searching LC−MS/MS mass spectrometry data using X!Tandem on the cloud. The workflow consists of 5 processors. The objectLogic processor prepares all inputs in the right format, i.e. keeping or converting strings into file object according to the following processor. The mzxmlDecomposer and pepxmlComposer run the decomposing/recomposing algorithms. objectLogic, mzxmlDecomposer and pepxmlComposer are Beanshell processors and they run locally. Xtandem runs X!Tandem on a remo...

Created: 2012-09-10

Credits: Yassene

Detect ellipse failures and get votable wi... (1)

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It detects if ellipse has failed by checking if the resulting data file exists. It adds a column (validellipse) that contains 1 if ellipse didn't fail and 0 if ellipse failed. It returns a votable that contains all the data with the new column and a votable that contains only the rows where ellipse didn't failed. It uses astrotaverna plugin (http://wf4ever.github.com/astrotaverna/).

Created: 2012-09-07

Credits: Julian Garrido

xlmPath (2)

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xml path

Created: 2012-09-06 | Last updated: 2012-09-06