Workflows

Image QA (RAW/NonRAW, Ssim, Equals) (1)

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Reads images either by reading the file directly or using dcraw depending on the image mimetype. Then runs QA algorithms to compare the images.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Markus Plangg

Image QA - Read image (RAW/NonRAW) (1)

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Reads an image for evaluation. How the file is read depends on the image type (RAW, NonRAW) of the current image and the image to compare with.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Markus Plangg

Propagation of CME from the Sun (1)

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Uses the processing service to calculate the objects (planets and observatories) which a CME might hit. Required longitude input is the longitude of the associated flare event.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Anja Le Blanc

VAMDC VALD query with SME processing (2)

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VAMDC workflow that queries the VALD Atomic database in Moscow and runs SME (Spectroscopy Made Easy) VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-02-24 | Last updated: 2012-09-12

CME backwards propagation (1)

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Workflow propagates an CME event from its observing point (planet/spacecraft) back to the sun. The propagation also provides the timing of this event at other points in space (planet/spacecraft)

Created: 2012-02-23 | Last updated: 2012-02-23

Credits: Anja Le Blanc

Propagation of the Solar Energetic Particl... (1)

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use of the processing service to calculate time delays to the planets Inputs: time when propagation should start from the hit object hit_object where was the SEP event observed speed of the solar wind error value of solar wind speed beta traveling speed of energetic particals as percentage of the speed of light

Created: 2012-02-22 | Last updated: 2012-02-22

Credits: Anja Le Blanc

Find protein identifications in PRIDE (2)

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Find protein identifications information in the PRIDE database using a protein accession as input.

Created: 2012-02-21 | Last updated: 2012-02-22

Credits: Rafael C. Jimenez

RAWverna Image Evaluator - Evaluate relative (1)

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Takes two images as byte array and compares them using the RAWverna Image Evaluator.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

RAWverna Image Evaluator - Evaluate Equals (1)

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Takes two images as byte array and compares them for equality using the RAWverna Image Evaluator.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

RAWverna image evaluation - Read images (RAW) (1)

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Reads RAW images for evaluation by RAWverna.

Created: 2012-02-21

Credits: Markus Plangg

RAWverna Image evaluation - Read Image (RAW) (1)

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Reads an image from the given path using dcraw for image comparison.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

RAWverna Image evaluation - Read images (R... (1)

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Reads images for evaluation by RAWverna. The read parameters depend on the type of the images.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

Get image mimetype (1)

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Returns the mimetype of an image.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

Convert by target path (1)

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Converts a file to a target format depending on the target path extension.

Created: 2012-02-21 | Last updated: 2012-08-14

Credits: Markus Plangg

Get a list of Protein Identification exper... (3)

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Get a list of Protein Identification experiments from PRIDE by a Gene Ontology query

Created: 2012-02-21 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

Parse QuickGO "proteinList" file format (2)

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Parse QuickGO "proteinList" file format. http://www.ebi.ac.uk/QuickGO/reference.html

Created: 2012-02-20 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

WCP-04 Exclusive choice - if/else branching (1)

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The choice of executing choiceA or choiceB is determined by using String_List_Intersection and String_List_Difference. If in="true" then the intersection will yield a non-empty list, triggering execution of choiceA. This list will however not differ from the input, and so choiceB will iterate over an empty list (ie. not execute). Note how using 'difference' for the else-case here means that if you run the workflow with in="bob", choiceB would still run. Some early if/el...

Created: 2012-02-20 | Last updated: 2012-02-20

Credits: Stian Soiland-Reyes

Attributions: Example of a conditional execution workflow Example of conditional invocation

Get a list of proteins from a Gene Ontolog... (1)

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Get a list of UniProt proteins that have been annotated with the same Gene Ontology (GO) term. This workflow uses the the QuickGO service

Created: 2012-02-20 | Last updated: 2012-02-22

Credits: Rafael C. Jimenez

Run a Workflow on Taverna Server (local t2... (1)

Uses a local t2flow file to submit and run this workflow on the taverna server. You need a user name and password to execute this workflow. Input to the workflow which runs remotely will be requested interactively.

Created: 2012-02-20

Credits: Anja Le Blanc

Attributions: Run a Workflow on Taverna Server

Run a Workflow on Taverna Server (1)

Uses the URL to a t2flow file to submit and run this workflow on the taverna server. You need a user name and password to execute this workflow. Input to the workflow which runs remotely will be requested interactively.

Created: 2012-02-17 | Last updated: 2012-02-17

Credits: Anja Le Blanc