myExperiment - Workflows

Taverna 1

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al basyid basyid

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Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2014-01-14

Credits: al basyid basyid

Taverna 2

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Eoincar

Average solar wind speed at ACE (1)

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This routine returns the average solar wind speed from ACE data given an input time interval.

Created: 2014-01-13

Credits: Eoincar

Taverna 2

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Eoincar

CME froward propagation (1)

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Ballistic propagation of CME is the SHEBA propagation model. CME speed and speed error produces an estimated time of arrival at desired location.Constructed by David Perez Suarez.

Created: 2014-01-13

Credits: Eoincar

Taverna 2

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Eoincar

Produce time interval from single time (1)

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Produce a time interval from a single input time.

Created: 2014-01-13

Credits: Eoincar

Taverna 2

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Eoincar

Produce vo table from helio catalogue (Cat... (1)

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A simple query of the Helio Event Catalogue (http://msslkz.mssl.ucl.ac.uk/helio_hec/HelioTavernaService?wsdl). User can enter catalogue name, time start, time end, and an SQL condition on the query.

Created: 2014-01-13

Credits: Eoincar

Taverna 2

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Eoincar

Produce vo table from helio catalogue (Cat... (1)

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A simple query of the Helio Event Catalogue (http://msslkz.mssl.ucl.ac.uk/helio_hec/HelioTavernaService?wsdl). User can enter catalogue name, time start, time end, the desired parameter, parameter to order by, and limit on the search result.

Created: 2014-01-13

Credits: Eoincar

Taverna 2

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Eoincar

Produce vo table from helio catalogue (Cat... (1)

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A simple query of the Helio Event Catalogue (http://msslkz.mssl.ucl.ac.uk/helio_hec/HelioTavernaService?wsdl). User can enter catalogue name, time start, time end and desired paramter(s).

Created: 2014-01-13

Credits: Eoincar

Taverna 2

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Renato De Giovanni

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show_test_results (4)

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Displays test results (ROC curve and confusion matrix) on an interface, allowing users to decide to continue the workflow or not.

Created: 2013-12-24 | Last updated: 2015-05-11

Taverna 2

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Renato De Giovanni

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biostif_show_projections (4)

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Displays model projections and points in the BioSTIF web interface (requires previous upload steps).

Created: 2013-12-24 | Last updated: 2015-05-11

Taverna 2

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Renato De Giovanni

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configure_external_test (5)

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Displays an interface allowing configuration of external test. Currently can be used to skip external test or run a cross validation procedure. In the later case, it is possible to specify the number of replicates, if AUC should be calculated, if confusion matrix should be calculated (using either a fixed threshold or lpt - lowest precision threshold).

Created: 2013-12-24 | Last updated: 2015-04-04

Taverna 2

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Renato De Giovanni

Project

parse_csv_points (4)

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Parses csv content with species occurrence points in the DarwinCore archive format, determining column indexes and returning the records as a list of points in openModeller format (XML). No distinction is made between presences or absences.

Created: 2013-12-24 | Last updated: 2014-11-18

Taverna 2

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Renato De Giovanni

Project

biostif_upload_points (5)

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Uploads species occurrence points to BioSTIF server.

Created: 2013-12-24 | Last updated: 2014-10-24

Taverna 2

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Renato De Giovanni

Project

select_matching_layers (5)

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Displays an interface where users can select matching layers (same variables) based on the labels of previously selected layers. This is typically needed when projecting a model into a different scenario, where the same variables selected for model creation need to be used on a different chronologic or geographic context. The interaction page may optionally include a label field.

Created: 2013-12-24 | Last updated: 2015-05-11

Taverna 2

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Renato De Giovanni

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biostif_upload_raster (4)

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Uploads a raster from a given URL to a BioSTIF server, from where it can be displayed through the BioSTIF web interface.

Created: 2013-12-24 | Last updated: 2015-05-11

Taverna 2

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Renato De Giovanni

Project

project_model (9)

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Projects a model based on the specified parameters.

Created: 2013-12-24 | Last updated: 2014-12-04

Taverna 2

Uploader

Sixuan Wang

Workflow of IFC data collection, crowd mod... (3)

Simulation workflow for crowd modeling in building. It combines all the components needed for crowd simulation (CAD/BIM data collection, crowd modeling, crowd simulation and 3D visualization). This version cannot be executed as is due to local tools dependancies (the components in yellow). The lattest version is available in http://www.myexperiment.org/workflows/4247.html.