1. Home
  2. Workflows

Workflows

Search filter terms
Filter by type
Filter by tag
Filter by user
Filter by licence
by-sa
1939
by
343
Filter by group
Filter by wsdl
Filter by curation
Results per page:
Sort by:
Showing 2916 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Cohen’s cumulative distance (1)

Thumb
The Cohen’s cumulative distance Workflow provides an environment to calculate the Cohen’s cumulative distance. The Cohen’s cumulative distance measures the difference between observed and expected vectors along the matrix path that the population would take to reach the expected population vector. It is a function of both the observed stage distribution (n0) and the structure of the matrix (A) (Williams et al 2011). Cohen’s cumulative distance will not work for reducible matrices or imprimiti...

Created: 2014-07-23

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12 Workflow Matrix Population Model construction and analysis v20

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Keyfitz delta (1)

Thumb
The Keyfit delta Workflow provides an environment to calculate the Keyfit delta value. Keyfitz’s delta is a measure of the distance between any two probability vectors (Keyfitz 1968). In this case is a measure of the distance between n (Observed Stage Distribution) and w (Stable Stage Distribution). The maximum value is 1 and the minimum value is 0 (when the vectors are identical). ============================================================ This workflow has been created by the Biodiversit...

Created: 2014-07-23

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12 Workflow Matrix Population Model construction and analysis v20

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow EBI_InterproScan (1)

Thumb
Perform EBI Interproscan

Created: 2014-07-16 | Last updated: 2014-07-16

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Experiments for gene (2)

Thumb
This workflow uses the Allen Brain REST API to fetch the experiements corresponding to a named gene

Created: 2014-07-15 | Last updated: 2014-07-15

Credits: User Alan Williams

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Download images for gene (3)

Thumb
This workflow downloads the first few images corresponding to experiments for the specified gene

Created: 2014-07-13 | Last updated: 2014-07-15

Credits: User Alan Williams

Taverna 2
Uploader
1405?size=60x60 At Sven

Workflow ARC to WARC Migration with CDX Index and w... (1)

Thumb
Workflow for migrating ARC to WARC and comparing the CDX index files (Linux). The workflow has an input port “input_directory” which is a local path to the directory containing the ARC files, and an input port “output_directory” which is the directory where the workflow outputs are created. The files in the input directory are migrated using the “arc2warc_migration_cli” tool service component to perform the migration. The “cdx_creator_arc” and “cdx_creator_warc” tool service components creat...

Created: 2014-07-09

Credits: User Sven

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Demonstration of configurable iteration (1)

Thumb
This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Created: 2014-07-09

Credits: User Alan Williams

Attributions: Workflow Demonstration of configurable iteration

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow EBI_InterproScan_broken (1)

Thumb
This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration. Note that this workflow is deliberately broken

Created: 2014-07-09

Credits: User Alan Williams User Katy Wolstencroft User Hamish McWilliam

Attributions: Workflow EBI_InterproScan_NewServices

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Jpylyzer - JP2 Image characteristics (1)

Thumb
Extracts image width, image height, file size, and validity of a jpeg2000 image.

Created: 2014-07-08 | Last updated: 2014-07-08

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Openjpeg tools - tiff2jp2 (1)

Thumb
Converts tiff to jp2 images using Openjpeg tools.

Created: 2014-07-08 | Last updated: 2014-07-08

RapidMiner
Uploader
4233?size=60x60 Cn Ruosen Lin

Workflow The Demo Process in RapidAnalytics Video (1)

Thumb
The first demo process used in the new version of RapidAnalytics video on exposing RapidAnalytics Processes as Web Services.

Created: 2014-07-08 | Last updated: 2014-07-08

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Graphicsmagick tiff/jp2/png/jpeg (1)

Thumb
Converts tiff/jp2/png/jpeg images using graphicsmagick convert. The target format can be seleced with the format parameter.

Created: 2014-07-07 | Last updated: 2014-07-07

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Imagemagick tiff/jp2/png/jpeg (2)

Thumb
Converts tiff/jp2/png/jpeg images using imagemagick convert. The target format can be seleced with the format parameter.

Created: 2014-07-07 | Last updated: 2014-07-07

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Evaluate MrBayes Run on convergence, model... (1)

Thumb
BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2014-07-04

Credits: User Saverio Vicario

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Stages vectors plots, Survival and Growth ... (2)

Thumb
The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices: - Survival values calculations per stage per year and its respective plot; - Growth rates (lambda) calculations per year and its respective plot; - Stage Vectors calculations and their respective plots. ====================================================== This workflow requires an instance of Rserve on localhost This workflow has been creat...

Created: 2014-07-02 | Last updated: 2014-08-29

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Gerard Oostermeijer

test
Uploader
4084?size=60x60 Yuliya Fetyukova

Workflow usability test workflow (1)

test

Created: 2014-06-30 | Last updated: 2014-06-30

Credits: User Yuliya Fetyukova

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Damping ratio (2)

Thumb
The Damping ratio Workflow provides an environment to calculate the damping ratio of several matrices and plot them. The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the population converges. ============================================================= This workflow requires an instance of Rse...

Created: 2014-06-25 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Gerard Oostermeijer

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow split_by_newline (1)

Thumb
Splits a string into a list of strings. The initial string must use newline as a separator

Created: 2014-06-24 | Last updated: 2014-10-02

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Parametric Bootstrap or Resample a project... (3)

Thumb
The Parametric Bootstrap or Resample a projection matrix Workflow provides an environment to resample a projection matrix using a multinomial distribution for transitions and a log normal distribution for fertilities (Stubben, Milligan, and Nantel. 2011). The resample is based on number of plants surveyed. The projection matrix A is first split into separate transition and fertility matrices. Dead fates are added to the transition matrix and the columns are then sampled from a Multinomial dis...

Created: 2014-06-18 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow RetrivingJob1 (1)

Thumb
Get Retrieve result of a job for which you possess the ID

Created: 2014-06-17 | Last updated: 2014-06-24

Results per page:
Sort by:
Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
About | Privacy | Publications | Contact / Feedback | Mailing List
Icons: Silk icon set 1.3

Copyright © 2007 – 2018 The University of Manchester and University of Southampton