EBI_InterproScan

Created: 2014-07-16 10:06:05 Last updated: 2014-07-16 10:19:28

Download Workflow

Perform EBI Interproscan

Preview

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/4338/download?version=1
[ More Info Expand ]

Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (2)

Name	Description
sequence	a protein sequence in Fasta format
email	Your email address

Processors (13)

Name	Type	Description
run	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan5?wsdl Wsdl Operation run
run_input	xmlsplitter
input	xmlsplitter
run_output	xmlsplitter
Status	workflow
getTextResult	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan5?wsdl Wsdl Operation getResult
getTextResult_input	xmlsplitter
tsv	stringconstant	Value tsv
getTextResult_output	xmlsplitter
getXmlResult	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan5?wsdl Wsdl Operation getResult
getXmlResult_input	xmlsplitter
xml	stringconstant	Value xml
getXmlResult_output	xmlsplitter

Beanshells (0)

Outputs (3)

Name	Description
status
text
xml

Datalinks (17)

Source	Sink
run_input:output	run:parameters
input:output	run_input:parameters
email	run_input:email
sequence	input:sequence
run:parameters	run_output:input
run_output:jobId	Status:JobID
getTextResult_input:output	getTextResult:parameters
tsv:value	getTextResult_input:type
run_output:jobId	getTextResult_input:jobId
getTextResult:parameters	getTextResult_output:input
getXmlResult_input:output	getXmlResult:parameters
xml:value	getXmlResult_input:type
run_output:jobId	getXmlResult_input:jobId
getXmlResult:parameters	getXmlResult_output:input
Status:getStatus_output_status	status
getTextResult_output:output	text
getXmlResult_output:output	xml

Coordinations (2)

Controller	Target
Status	getXmlResult
Status	getTextResult

Information Workflow Type

Taverna 2

Information Uploader

Alan Williams

Information Component Validity

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (0)

(People/Groups)

None

Information Attributions (0)

(Workflows/Files)

None

Information Tags (1)

Uploader tags

component

Log in to add Tags

Information Shared with Groups (1)

myGrid

Information Featured In Packs (1)

Test components

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1219 viewings

887 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

EBI_InterproScan

Created by Alan Williams on Wednesday 16 July 2014 10:06:03 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (3)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Uploader

Alex Nenadic

EBI_InterproScan_NewServices (2)

Download

This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.