Workflows

Temporal Expression Extraction (1)

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This experiment evaluates a method of extracting temporal expressions from documents. It uses the WikiWars-corpus, a time-annotated corpus of descriptions of the course of wars and conflicts. An evaluation component compares the experimently identified expressions with the pre-annotated expressions of the corpus and calculates precision, recall and  f-score.

Created: 2012-05-22 | Last updated: 2012-05-22

Credits: AGeduldig

Watershed (2)

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Local machine example

Created: 2012-05-21 | Last updated: 2012-05-21

Credits: Jorgejesus

Mp3ToWav Mig+QA (2)

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Migrates Mp3 files from input List to Wav files and performs QA. The QA steps include File Format Validation, Significant Property Comparison and migrationQA file content comparison (all CLI). This workflow matches solution SO4 on the SCAPE opf wiki, see http://wiki.opf-labs.org/display/SP/SO4+Audio+mp3+to+wav+Migration+and+QA+Workflow

Created: 2012-05-21 | Last updated: 2013-04-24

Credits: Bolette Jurik

CHEMOPREVENTION WORKFLOW2 WITH DATA (1)

 CHEMOPREVENTION WORKFLOW WITH DATA

Created: 2012-05-19 | Last updated: 2012-05-19

Credits: Kleo Achilleos

CHEMOPREVENTION WORKFLOW1 (1)

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 CHEMOPREVENSION WORKFLOW NO DATA INCLUDED

Created: 2012-05-19 | Last updated: 2016-04-30

Credits: Kleo Achilleos

Hybrid recommendation system (1)

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This is one hybrid recommendation system combining linear regression recommender, created using RapidMiner core operators, and Recommender extension multiple collaborative filtering and attribute based operators.

Created: 2012-05-17

Credits: Matej Mihelčić Matko Bošnjak

Online update recommendation web service (1)

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 After some arbitrary number of recommendations to specific users, system has to update recommendations in \textit{item recommendation table}. This is accomplished by calling the online update recommendation web service, which updates the recommendation model in RapidAnalytics repository and updates the recommendations for specific users in \textit{item recommendation table}.

Created: 2012-05-11 | Last updated: 2012-05-11

Write activity web service (1)

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 When the specific user $i$ "consumes" certain item $j$ the write activity web service is called, which writes activity $(i,j)$ to \textit{train set table} and removes recommendation $j$ for user $i$ from \textit{item recommendation table} in SQL database.

Created: 2012-05-11 | Last updated: 2012-05-11

Execution time measurement for Rapidminer ... (1)

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This is a workflow that measures execution times of various RapidMiner operators on random polynomial classification datasets of various sizes in the range of 4 to 2000 examples and attributes.

Created: 2012-05-11 | Last updated: 2012-05-11

Front-end Recommendation Web Service (1)

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 Front-end recommendation web service has a simple job to query the cached recommendations from the \textit{item recommendation table}

Created: 2012-05-11 | Last updated: 2012-05-11

Calibration for execution time extension (1)

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 Benchmark workflow that loops Naive Bayes operator many times and provides estimate of the system's overall performance.

Created: 2012-05-10 | Last updated: 2012-05-10

Extract DEC and RA from whitespace separat... (2)

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This workflow extracts DEC and RA coordinates from a whitespace seperated file and this is a silly description.

Created: 2012-05-10 | Last updated: 2012-09-24

Credits: Stian Soiland-Reyes

Simple Recommender System Web Service (1)

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 This workflow takes macro value of user request and computes top-n recommendations from already learned model on train set. Macro value is transformed to example set with the appropriate \textit{user identification} role within \textit{ProcessInput} subprocess operator.   Simple recommendation web service workflow takes three inputs: \begin{enumerate} \item Macro value \textit{user} - identification number of user request \item Train set from RM repository \item Learned Mo...

Created: 2012-05-10 | Last updated: 2012-05-10

Simple image migration (1)

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Then starts a migration action on an image and extracts properties from the original and migrated image. The properties are compared and a QA algorithms is started on the image data itself .

Created: 2012-05-08 | Last updated: 2012-05-08

Credits: Markus Plangg

Find workflow ancestors (2)

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Given a t2flow file (Taverna 2 workflow), extract ancestor workflow UUIDs and search myExperiment for matching workflow entries. Note that this will also match the workflow itself and nested workflows, but does not match against other workflows having the same ancestors (but newer UUIDs).

Created: 2012-05-08 | Last updated: 2012-07-09

Credits: Stian Soiland-Reyes

Check Java Cryptography Unlimited Strength (1)

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Checks if Java Cryptography Extension (JCE) Unlimited Strength Jurisdiction Policy Files is installed, and redirects user to correct download page and relevant lib/security folder if not.

Created: 2012-05-08 | Last updated: 2012-05-08

Credits: Stian Soiland-Reyes

Attributions: Find/show Taverna's home directory

extractGInumber (1)

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 This workflow uses regex pattern to compare the identity percentage of each hits against the input sequnece and return the whole information of the hits and the GI number of them (if they including the GI number as a sub information)   inputfileURL:  the location of the Gi number   outputText  : the list of all the hits and the GI number of them

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: BioCo Consultants

filterDifferenceInLists (1)

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 This workflow output a list of the protein or any string hits in the first list but not in the second list.    output : output file location com : comparision protein list our : interested protein list out1: output as a string

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: BioCo Consultants

ConcatStringTogether (1)

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 This workflow is as simple as you can imagine! It can be used to remove the information tags in a fasta file and concat the sequence together   fastaURL :  the input fasta reads file location seqURL : the outcome sequence file location wholeSeq : the output sequence as an entire string

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: BioCo Consultants

generateWholeSeqAnnotation (1)

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 This work flow is used for genereating all the known genes together to annotate a whole or a large region of genome sequence.   outputfilrURL:  the location of the output file Ginumber:   the input gi gene number wholeGenomeSeq:    the whold sequence annotation information output:    the output of genbank text

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: BioCo Consultants

Get top blastx hit of a list of contigs (1)

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This workflow takes a contigs.fasta file , gets all the ORF's present in it , runs blastx on each ORF, gets the FASTA file of the top blastX hit and its GI number.

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: BioCo Consultants

FINAL VERSION (1)

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 From genome to genbank file and annotations Manual and documentation at: http://www.students.ncl.ac.uk/g.georgiou/newweb/

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: Georgeg9 BioGreen Ltd.

Attributions: Convert to KEGG ID NCBI Gi to Kegg Pathways EBI_NCBI_BLAST EBI_InterproScan_NewServices

Run on amazon cloud (1)

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 Execute commands on amazon cloud machines Manual and documentation at: http://www.students.ncl.ac.uk/g.georgiou/newweb/

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: Georgeg9 BioGreen Ltd.

Search for Gene Expression Images using an... (1)

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This is a simple workflow demonstrating how to integrate multiple linked data sources using restful services in Taverna. In this workflow it first searches for all possible gene names for a query gene from FlyBase repository, an authorative genetic database for Drosophila research, and then it uses returned gene names to search for gene expression images from Oxford FlyTED image repository. Two Restful services were used: One for retrieving all flybase features matching a querying ge...

Created: 2012-05-04 | Last updated: 2012-05-08

Credits: Junzhao

Get Alternative Gene Names for a Drosophil... (1)

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This is a simple workflow testing running a restful service in Taverna. This restful service http://www.open-biomed.org.uk/service/flybase/features/name/{name} is part of the flykit/flybase services http://code.google.com/p/open-biomed/wiki/Flybase, which is built using the Talis Puelia Linked Data API (http://code.google.com/p/puelia-php/). We want to use this simple workflow to test the idea of bridging linked data and scientific workflows using Restful services. A test input gene name...

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: Junzhao

Get FlyTED Gene Expression Images for a Ge... (1)

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This is a simple workflow testing running a restful service in Taverna. This restful service http://www.open-biomed.org.uk/service/flyted/records/probe/{probe} is part of the flykit/flyted services http://code.google.com/p/open-biomed/wiki/Flyted, which is built using the Talis Puelia Linked Data API (http://code.google.com/p/puelia-php/). We want to use this simple workflow to test the idea of bridging linked data and scientific workflows using Restful services. A test input gene name can ...

Created: 2012-05-04 | Last updated: 2012-05-04

Credits: Junzhao

GetCities2 (1)

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 Get cities by entering a country name

Created: 2012-05-03 | Last updated: 2012-05-03

Credits: Xiaoxiaoshijie

SNP Position Information (1)

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This workflow extracts information about the position of SNPs and the genes they are associated with, using BioMart (ENSEMBL Variation 66).

Created: 2012-04-17 | Last updated: 2012-04-17

Credits: Katy Wolstencroft

Match gene lists based on information in l... (7)

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[THIS WORKFLOW IS IN BETA STAGE] This workflow computes the match between two lists of Entrez Gene Identifiers by means of concept profile matching (Jelier et al., van Haagen et al.). The result of this is a list of concepts ordered by their matching score (the length of the list set by maxMatchNr). Of this list the summed scores are explained by computing the concepts that contribute most to the combination of the matching genes. Example to explain (by analogy): When a group of informatic...

Created: 2012-04-17 | Last updated: 2012-04-25

Credits: Marco Roos Reinout van Schouwen Eleni Kristina Hettne BioSemantics

Attributions: Match concept profiles Explain concept scores

ICDAR 2011 End-to-End Applications contest... (1)

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Full workflow for use with the DAE platform and as used for the ICDAR 2011 "Document Analysis Algorithm Contributions in End-to-End Applications" contest, including contributed algorithms.

Created: 2012-04-14 | Last updated: 2012-04-14

Credits: Bart Lamiroy

Create and execute a simulation on the RIS... (1)

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Create and execute a simulation on the RISE server. This workflow take 3 inputs: the XML to configure the RISE framework, the URL of the ZIP file model (a zipped directory containing the model files), and the new framework name. This workflow produce on the output the simulation LOG file.

Created: 2012-04-09

Unix tool service using string replacement (1)

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The tool service outputs a message that greets using the names specified on Greet's input ports.

Created: 2012-04-05

Credits: Alan Williams

Spreadsheet Import Example (1)

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Example using the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports the file spreadsheet file WaterUse.xlsx and generates a graph from the date. The source data is from http://data.gov.uk/

Created: 2012-04-05

Credits: Alan Williams

Simple Python example (1)

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This workflow generates a random number within the range 0 to 100. The generation is done by a python script. The workflow assumes that python is in the path.

Created: 2012-04-05

Credits: Alan Williams

Secure Web service call example (2)

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This is an example of a workflow that contains a call to a secure Web service that runs behind HTTPS and requires user to authenticate. The first thing you can expect to see is a pop up dialog asking if you trust the Web service to be invoked over HTTPS. You can use testuser/testpasswd as username and password for authentication when running the workflow. To see where the security is being configured, right-click the service in the diagram and select "Configure security" from the menu. You ...

Created: 2012-04-05 | Last updated: 2013-06-11

Credits: Alan Williams

Retrieve sequence in EMBL format (1)

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This workflow retrieves a sequence associated with its features in embl format

Created: 2012-04-05 | Last updated: 2012-04-05

Credits: Alan Williams

Render gene via BioGPS (3)

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This workflow uses the REST API of BioGPS to list the plugins and then allow the user to select which plugin to use to display the input gene id

Created: 2012-04-05 | Last updated: 2012-05-23

Credits: Alan Williams

Pipelined list iteration (1)

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Perform multiple iterations of services in order to show pipelining

Created: 2012-04-05

Credits: Alan Williams

Numerically adding two values. (1)

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This workflow relies on a Unix system. It wraps the "bc" command line calculator. It downloads the calculation script from a URL.

Created: 2012-04-05

Credits: Alan Williams

Multiple choice quiz (1)

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A fun example workflow showing user-interaction and service looping

Created: 2012-04-05 | Last updated: 2012-04-05

Credits: Alan Williams

Hello World (1)

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One of the simplest workflows possible. No workflow input ports, a single workflow output port "greeting", outputting "Hello, world!" as produced by the String Constant "hello".

Created: 2012-04-05 | Last updated: 2014-03-03

Credits: Alan Williams

Hello Anyone (1)

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An extension to helloworld.t2flow - this workflow takes a workflow input "name" which is combined with the string constant "Hello, " using the local worker "Concatenate two strings", and outputs the produced string to the workflow output "greeting".

Created: 2012-04-05 | Last updated: 2014-03-03

Credits: Alan Williams

GBSeq test (1)

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This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

Created: 2012-04-05 | Last updated: 2012-04-05

Credits: Alan Williams

Fetch Dragon images from BioMoby (1)

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Fetch images and annotations of snapdragons

Created: 2012-04-05 | Last updated: 2012-04-05

Credits: Alan Williams

Fetch today's xkcd comic (1)

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Use the local services and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Created: 2012-04-05

Credits: Alan Williams

Fetch PDB flatfile from RCSB server (1)

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Given an identifier such as '1crn' fetches the PDB format flatfile from the RCSB

Created: 2012-04-05

Credits: Alan Williams

Example workflow for REST and XPath activi... (1)

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This workflow fetches weather forecast for the user-specified location. First of all it uses the provided location name to obtain a WOEID ("Where On Earth ID") of that location, then uses that unique identifier to fetch the weather forecast from Yahoo server. Multiple results may be obtained in case there is no unique translation of the location to a WOEID. REST activity is used to perform HTTP requests and fetch data from remote servers; XPath activity is then used to parse the XML data a...

Created: 2012-04-05 | Last updated: 2012-04-05

Credits: Alan Williams

Example of explicit looping (1)

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This workflow demonstrates how a nested workflow can be called an explicit number of times. Note that the loop iterator does not need to be used in the logic of the loop contents. It can be used as a sentinel (see the conditional workflow)

Created: 2012-04-05

Credits: Alan Williams

Example of conditional invocation (1)

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This workflow demonstrates how nested workflows can be conditionally invoked

Created: 2012-04-05 | Last updated: 2012-04-05

Credits: Alan Williams

Example for external tools with zip and unzip (1)

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This workflow only works on a Unix machine. This workflow takes a fixed URL from which a text file is downloaded (output as Original_file). That file is zipped (output as Zipped_File) and then unzipped again (output as Unzipped_File). The orginal file and the unzipped version are then diff'd/

Created: 2012-04-05 | Last updated: 2012-04-05

Credits: Alan Williams

EBI_InterproScan_NewServices (2)

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This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

Created: 2012-04-05 | Last updated: 2014-04-09

Credits: Alan Williams

Demonstration of configurable iteration (1)

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This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Created: 2012-04-05 | Last updated: 2012-04-05

Credits: Alan Williams

BioMoby tutorial workflow (1)

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A workflow from part of the BioMoby tutorial

Created: 2012-04-05 | Last updated: 2012-04-05

Credits: Alan Williams

BiomartAndEMBOSSMouseRat (1)

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This workflow retrieves all genes on human chromosome 22 that are associated with a disease and aligns the upstream regions of the mouse and rat homologues. The alignments are plotted and corresponding sequence ids are also returned.

Created: 2012-04-05

Credits: Alan Williams

BiomartAndEMBOSSMouseRat (1)

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This workflow retrieves all genes on human chromosome 22 that are associated with a disease and aligns the upstream regions of the mouse and rat homologues. The alignments are plotted and corresponding sequence ids are also returned.

Created: 2012-04-05

Credits: Katy Wolstencroft

Get Pathway-Genes and gene description by ... (2)

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Given a specific entrez gene id, returns the pathways that this gene participates in and for each of those pathways which genes (including their description) are associated with.

Created: 2012-03-27 | Last updated: 2012-04-03

Credits: Eleni

Format_transform_RMonto-RSextension (1)

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This workflow provides transformation of an item description attribute set from RMonto operator into a format required by attribute based k-NN operators of the Recommender extension.

Created: 2012-03-26

DemoWorkflow (1)

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 Demo Workflow

Created: 2012-03-22 | Last updated: 2012-03-22

Credits: Jribault

(Updated)Retrieve sequence in EMBL format. (1)

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This workflow retrieves a sequence associated with its features in embl format.

Created: 2012-03-19 | Last updated: 2012-04-02

Credits: Ankit upadhyay

Available instruments through DPAS which a... (1)

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This workflow uses a DPAS servlet to obtain all available intrument keys in the DPAS (Data Provider Access Service) and formats the return as VOTable.

Created: 2012-03-16 | Last updated: 2012-03-16

Credits: Anja Le Blanc

Attributions: Available instruments through DPAS Split VOTable into its values

Example of Execute_SQL_Query with parameters (1)

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This workflow connects to a mysql on localhost, queries the "world" database which is one of the test databases on MySQL 5.5, queries it about which countries have Dutch as a language, and emits answers in both Lists and in xml. This workflow is intended as an example to help you see the syntax for the various inputs to this local service beanshell. see: http://www.mygrid.org.uk/dev/wiki/display/taverna/Execute+SQL+Query for instructions on jars, dependencies etc. The jar used he...

Created: 2012-03-16 | Last updated: 2012-03-16

Credits: Helen Hulme

localhost Tesseract-Ocrad comparison (3)

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Simple demo workflow, for use with a standalone (localhost) version of the DAE platform. Compares Tesseract and Ocrad OCR results. For demonstration reasons and ease of use, this workflow has hardcoded username/password values. This is, obviously, very bad, but since it relates only to a sandboxed virtual server, potential damage is null.

Created: 2012-03-16 | Last updated: 2012-05-16

Credits: Bart Lamiroy

Simple Tesseract-Ocrad comparison (1)

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Simple demonstration workflow for use with the on-line Lehigh-based DAE server, comparing the results of Tesseract and Ocrad OCR engines on a specific document image.

Created: 2012-03-16 | Last updated: 2012-03-16

Credits: Bart Lamiroy

kddcup98 direct marketing (1)

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RapidMiner supports Meta Learning by embedding one or several basic learners as children into a parent meta learning operator. In this example we generate a data set with the ExampleSetGenerator operator and apply an improved version of Stacking on this data set. The Stacking operator contains four inner operators, the first one is the learner which should learn the stacked model from the predictions of the other four child operators (base learners). Other meta learning schemes like Boosting ...

Created: 2012-03-15

Check in UOC which instruments were observ... (2)

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Query of the UOC to find the instrument_observatory keys for instruments which were observing at a given time period and a given location.

Created: 2012-03-15 | Last updated: 2012-03-15

Credits: Anja Le Blanc

Jpylyzer Review Demonstration (1)

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 Review demonstration workflow that compares the jpylyzer tool with the struct checker and jhove.  Runs on British Library JISC 1 content, looking for invalid images.

Created: 2012-03-15 | Last updated: 2012-03-15

Credits: Carl

Jane's Final Workflow (1)

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Example workflow demonstrating the use of the DAE platform's web service capabilities, as published "The Non-Geek's Guide to the DAE Platform", Bart Lamiroy & Daniel Lopresti, DAS - 10th IAPR International Workshop on Document Analysis Systems (2012).

Created: 2012-03-14 | Last updated: 2012-03-14

Credits: Bart Lamiroy

Split VOTable into its values (1)

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This workflow takes a single VOTable and splits it up in a vector for the names of fields, a vector for the UCDs of the fields, a vector for the UTypes of the fields, and a two dimensional vector for the values.

Created: 2012-03-14 | Last updated: 2012-03-14

Credits: Anja Le Blanc

Co-rotating Interaction Regions backwards ... (1)

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Run the cir backwards propagation code on the HELIO processing service. Required inputs: time start of backwards propagation, the object (planet/spacecraft) from where the propagation should start, assumed solar wind speed at the time, assumed error of solar wind speed Output: VOTable with times at different points in solar system

Created: 2012-03-14 | Last updated: 2012-03-14

Credits: Anja Le Blanc

Propagation of the Solar Energetic Particl... (1)

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use of the processing service to calculate time delays to the planets Inputs: time when propagation should start from the hit object hit_object where was the SEP event observed speed of the solar wind error value of solar wind speed beta traveling speed of energetic particals as percentage of the speed of light

Created: 2012-03-13 | Last updated: 2012-03-13

Credits: Anja Le Blanc

Associate SEP events at Earth with flare, ... (1)

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This is the implementation of a use case worked on during CDAW3 of the HELIO project. SEP events propagated backward from Earth to the Sun. We allow for +- 30 min around the predicted time to search for flare events. The timing of the flare event informs the search time for Type III radio event (time_start to time_peak) and for the CME event (time_start to time_start+1h). Results are presented in a mulitlayered VOTable.

Created: 2012-03-13 | Last updated: 2012-03-13

Credits: Anja Le Blanc Rositsa

Attributions: Propagation of the Solar Energetic Particles to the Sun Extract content of columns from VOTables

BayesAss+ estiamtion of populations migrat... (1)

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BayesAss+ is a program that estimates recent migration rates between populations using MCMC. It also estimates each individual’s immigrant ancestry, the generation in which immigration occurred (i.e. the individual can be assigned as an immigrant from a specific population, a non-immigrant, or the offspring of an immigrant and a non-immigrant), the population (as opposed to the sample) allele frequencies, inbreeding (F) values within each population, and genotypes at any locus wit...

Created: 2012-03-08

Credits: Pipeline

Fdist2 Simulation Pipeline Workflow (1)

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Fdist2 is a simulation program to detect loci that might be under selection in samples from structured populations.   Workflow Usage & Specifications The workflow reads an input file "fdist_params2.dat", which consists of 6 lines. This file must only contain numbers in the format described: Total number of demes (100 max). No of populations sampled (must be less than or equal to total number of demes). Expected Fst for infinite allele, infinite island model. Sample si...

Created: 2012-03-08 | Last updated: 2012-03-08

Credits: Pipeline

Migrate Pipeline Workflow (1)

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Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. Migrate uses maximum likelihood or Bayesian inference to jointly estimate all parameters.     Workflow Usage & Specifications Migrate can use the following data types: •Sequence data using Felsenstein's 84 model with or without site rate variation, •Single nucleotide poly...

Created: 2012-03-08

Credits: Pipeline

Get Pathway-Genes by Entrez gene id (4)

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Given a specific entrez gene id, returns the pathways that this gene participates in and for each of those pathways which genes are associated with. The workflow outputs also a KEGG pathway map and the objects are colored according to the input color values.

Created: 2012-03-08 | Last updated: 2012-04-14

Credits: Eleni

VAMDC Query to Two Nodes using HTML Consum... (2)

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Workflow to two TAP-XSAMS Node and see results in a HTML view using a Consumer Service. This workflow queries the BaseCol and CDMS Node for MoleculeStoichiometricForumua of 'CO' VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide **NOTE an update to the plugin will need to be released later to handle prefixes on certain query nodes and their restrictables. For instance BaseCol expects 'Target.MoleculeStoichiometricFormula' instead of just 'MoleculeSto...

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

VAMDC SpectCol tool using Full VAMDC-Tap Q... (2)

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Runs the SpectCol tool bundled with the plugin and can handle a list of URLS. This version asks for the full vamdc URL. SpectCol information: SPECTCOL is a tool that implements VAMDC standards, r etrieve relevant information from different databases such as CDMS, HITRAN, BASECOL, and can upload local files. All transfer of data between the client and the databases use the VAMDC-XSAMS schema. The spectroscopic and collisional information is combined and useful outputs (ascii or xsams) are ...

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow

VAMDC Query to Two Nodes using HTML Consum... (2)

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Workflow to two TAP-XSAMS Node and see results in a HTML view using a Consumer Service. This workflow queries the Hitran and CDMS Node for MoleculeStoichiometricForumua of 'CO' VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

VAMDC to query on ChemicalName 'OR' Stoich... (4)

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Workflow to query just one TAP-XSAMS Node. This workflow queries the Hitran Node for MoleculeChemicalName of 'HF' and StoichimetricFormula of 'HV' Demonstrates building a query for two Restrictables. VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

Workflow to Query TAP-XSAMS node. (3)

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Workflow to just one TAP-XSAMS Node. This workflow queries the Hitran Node for MoleculeChemicalName of 'HF' VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-09-12

Credits: Stormshadow

VAMDC VALD query with SME processing (4)

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VAMDC workflow that queries the VALD Atomic database in Moscow and runs SME (Spectroscopy Made Easy) VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-03-07 | Last updated: 2012-11-29

Credits: Stormshadow Virtual Atomic and Molecular Data Centre - VAMDC

RISE UI: Select ZIP file (1)

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 This workflow ask the user to select a ZIP file on his own computer.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Select XML file (1)

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 This workflow ask the user to select an existing XML file on his own computer.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Create a Framework XML File (1)

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This workflow create a framework configuration XML file based on user interaction.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Choose User Workspace (1)

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This workflow ask the user to select a user workspace among those present on the RISE server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Choose Service Type (1)

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This workflow ask the user to select a service type among those present on the RISE server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Choose Framework (1)

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This workflow ask the user to choose a framework among those present on the RISE server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE UI: Ask Framework Name (2)

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  This workflow ask the user to enter a new framework name.

Created: 2012-03-05 | Last updated: 2012-03-22

Credits: Jribault

RISE Atomic Service: Upload ZIP Model File (1)

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 This workflow upload a ZIP file of the simulation model on the RISE server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE Atomic Service: Get Simulation Result (1)

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 This workflow get the simulation result of an existing simulation on the RISE server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE Atomic Service: Execute Simulation (1)

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 This workflow execute a simulation on the RISE server, and wait for its completion.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE Atomic Service: Delete Framework (1)

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 This workflow delete an existing framework on the RISE Server.

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

RISE Atomic Service: Create Framework (1)

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 This workflow create a new framework on the RISE Server

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

Meta-mining workflow that performs crossva... (1)

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Performs a crossvalidation on a data set composed of baseline RapidMiner workflows described with dataset characteristics used by the given workflow and the learning algorithm used in the given workflow.

Created: 2012-03-05 | Last updated: 2012-03-05

RISE Atomic Service: Create Account (1)

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 This workflow create an new user account on the RISE server

Created: 2012-03-05 | Last updated: 2012-03-05

Credits: Jribault

Semantic meta-mining workflow that perform... (1)

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Performs a crossvalidation on a data set composed of meta-data of baseline RapidMiner workflows expressed in RDF with the DMOP's ontology terminology for representing processes. Includes discovery of a set of semantic features (patterns) by the Fr-ONT-Qu algorithm (‘workflow patterns’). Through propositionalisation approach those features may be used in an arbitrary (propositional) RapidMiner classification operator.

Created: 2012-03-05 | Last updated: 2012-03-05

Filter CME events to events which could ha... (1)

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This workflow uses the initial time period to search for time periods where Earth and Mars are not further appart than 80 degrees. These time periods are used to find Halo CME events. The CME events are forward propagated to Earth and Sun. Only events were the propagation model predicts that both planets are on the propagation path will be included in the final VOTable

Created: 2012-02-29 | Last updated: 2012-02-29

Credits: Anja Le Blanc

Disability estimates by year (1)

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Uses census and health survey for england together with R to estimate disability for districts in the UK

Created: 2012-02-28

Credits: Ian Dunlop

Planning Overview (Scp, Migration, Charact... (1)

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Copies an image from a remote path using scp. Then starts a migration action on the image and extracts properties from the original and migrated image. The properties are compared and on the image data itself, QA algorithms are started.

Created: 2012-02-28

Credits: Markus Plangg

Image Characterisation - Fits (Simple) (1)

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Extracts metadata from images.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Markus Plangg