BioMoby tutorial workflow
Created: 2012-04-05 16:39:26
Last updated: 2012-04-05 16:39:27
A workflow from part of the BioMoby tutorial
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Authors (1)
Titles (1)
BioMoby tutorial workflow |
Descriptions (1)
A workflow from part of the BioMoby tutorial |
Dependencies (0)
Inputs (2)
Name |
Description |
namespace |
The namespace of the identifier
|
id |
An gene identifier
|
Processors (6)
Name |
Type |
Description |
Object |
biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NameObjectBiomoby Authority Nameopeninformatics.com |
getGenBankFasta |
biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NamegetGenBankFastaBiomoby Authority Namebioinfo.icapture.ubc.caBiomoby Category |
Parse Moby Data(FASTA) |
biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
parseDragonDBBlastText |
biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NameparseDragonDBBlastTextBiomoby Authority Nameantirrhinum.netBiomoby Category |
getDragonBlastText |
biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NamegetDragonBlastTextBiomoby Authority Nameantirrhinum.netBiomoby Category |
restrict |
soaplab |
Endpointhttp://www.ebi.ac.uk/soaplab/services/nucleic_restriction.restrict |
Outputs (3)
Name |
Description |
fasta_out |
|
moby_blast_ids |
|
restrict_out |
|
Datalinks (10)
Source |
Sink |
namespace |
Object:namespace |
id |
Object:id |
Object:mobyData |
getGenBankFasta:Object(identifier) |
getGenBankFasta:FASTA(fasta) |
Parse Moby Data(FASTA):mobyData('FASTA') |
getDragonBlastText:NCBI_BLAST_Text(blast) |
parseDragonDBBlastText:NCBI_BLAST_Text(blastreport) |
getGenBankFasta:FASTA(fasta) |
getDragonBlastText:FASTA(sequence) |
Parse Moby Data(FASTA):fasta_'content' |
restrict:sequence_direct_data |
Parse Moby Data(FASTA):fasta_'content' |
fasta_out |
parseDragonDBBlastText:Object(Collection - 'hit_ids') |
moby_blast_ids |
restrict:outfile |
restrict_out |
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