Workflows

show_test_results (4)

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Displays test results (ROC curve and confusion matrix) on an interface, allowing users to decide to continue the workflow or not.

Created: 2013-12-24 | Last updated: 2015-05-11

biostif_show_projections (4)

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Displays model projections and points in the BioSTIF web interface (requires previous upload steps).

Created: 2013-12-24 | Last updated: 2015-05-11

configure_external_test (5)

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Displays an interface allowing configuration of external test. Currently can be used to skip external test or run a cross validation procedure. In the later case, it is possible to specify the number of replicates, if AUC should be calculated, if confusion matrix should be calculated (using either a fixed threshold or lpt - lowest precision threshold).

Created: 2013-12-24 | Last updated: 2015-04-04

parse_csv_points (4)

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Parses csv content with species occurrence points in the DarwinCore archive format, determining column indexes and returning the records as a list of points in openModeller format (XML). No distinction is made between presences or absences.

Created: 2013-12-24 | Last updated: 2014-11-18

biostif_upload_points (5)

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Uploads species occurrence points to BioSTIF server.

Created: 2013-12-24 | Last updated: 2014-10-24

select_matching_layers (5)

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Displays an interface where users can select matching layers (same variables) based on the labels of previously selected layers. This is typically needed when projecting a model into a different scenario, where the same variables selected for model creation need to be used on a different chronologic or geographic context. The interaction page may optionally include a label field.

Created: 2013-12-24 | Last updated: 2015-05-11

biostif_upload_raster (4)

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Uploads a raster from a given URL to a BioSTIF server, from where it can be displayed through the BioSTIF web interface.

Created: 2013-12-24 | Last updated: 2015-05-11

project_model (9)

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Projects a model based on the specified parameters.

Created: 2013-12-24 | Last updated: 2014-12-04

evaluate_model (9)

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Evaluates a model, returning model values for a given set of points and layers.

Created: 2013-12-10 | Last updated: 2014-12-04

test_model (11)

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Tests a model based on the specified parameters (confusion matrix and/or ROC curve).

Created: 2013-12-10 | Last updated: 2014-12-04

create_model (10)

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Creates a model based on the specified parameters.

Created: 2013-12-10 | Last updated: 2014-12-04

select_or_create_mask (7)

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Displays an interface so that users can select or create a mask.

Created: 2013-12-10 | Last updated: 2015-04-04

select_algorithm_and_set_parameters (2)

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Displays an interface to select one of the algorithms and then another interface to set algorithm parameter values. Returns selected algorithm and parameter values as XML.

Created: 2013-12-06 | Last updated: 2015-04-04

get_available_algorithms (3)

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Retrieves all available algorithms from the openModeller web service, returning an XML.

Created: 2013-12-06 | Last updated: 2014-11-04

select_layers (4)

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Displays an interface to select one or more environmental layers. Returns a list of labels and a list of ids for the selected layers, both lists separated by line feed.

Created: 2013-12-06 | Last updated: 2015-05-11

get_available_layers (8)

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Retrieves all available environmental layers from the openModeller web service and optionally from the BioSTIF service. In the first case, a single XML is returned according to the openModeller XML Schema, and in the second case a list of XML is returned for each BioSTIF workspace.

Created: 2013-12-06 | Last updated: 2015-03-26