Workflows

A Talend mashup to discover PARP proteins ... (3)

• Download

A Talend workflow to answer this specific question :What is known about PARP family proteins involved in pathway according to Reactome ?by fetching RDF data from Bio2RDF`s HGNC, UniProt REST service and EBI Reactome SPARQL endpoint, all Semantic Web public resources.

Created: 2014-02-10 | Last updated: 2014-04-07

Credits: Francois Belleau

RTCalc Retention Time Prediction and Outli... (1)

• Download

This workflow takes as input a pepXML file from PeptideProphet, applied RTCalc and outputs a filtered list of peptides based on the retention time Z-scores.

Created: 2014-02-06 | Last updated: 2014-02-06

Credits: Magnus Palmblad Sonja Holl

PhotoHawk - SSIM (1)

• Download

This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using SSIM metric (http://purl.org/DP/quality/measures#15).

Created: 2014-02-05

Credits: Artur Kulmukhametov

PhotoHawk - AE (1)

• Download

This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using AE metric (http://purl.org/DP/quality/measures#4).

Created: 2014-02-05

Credits: Artur Kulmukhametov

PhotoHawk - MAE (1)

• Download

This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using MAE metric (http://purl.org/DP/quality/measures#5).

Created: 2014-02-05

Credits: Artur Kulmukhametov

PhotoHawk - MSE (1)

• Download

This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using MSE metric (http://purl.org/DP/quality/measures#6).

Created: 2014-02-05

Credits: Artur Kulmukhametov

PhotoHawk - PAE (1)

• Download

This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using PAE metric (http://purl.org/DP/quality/measures#7).

Created: 2014-02-05

Credits: Artur Kulmukhametov

Test interaction page in myExperiment (9)

• Download

This workflow demonstrates the feasibility of storing interaction pages in myExperiment

Created: 2014-02-04 | Last updated: 2014-02-06

Credits: Jon Giddy

Entrez Gene to KEGG Pathway (1)

• Download

This workflow takes in Entrez gene ids then adds the string "ncbi-geneid:" to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned.

Created: 2014-01-30

Credits: Alice Heliou

setp2 (1)

• Download

Traduction test

Created: 2014-01-30 | Last updated: 2014-01-30

Credits: Alice Heliou

SimpleTest (1)

• Download

This is a simple test workflow. It has only one node that takes an input (a string) and return a string of the form processed(input).

Created: 2014-01-28 | Last updated: 2014-01-28

Credits: Gab

Empty list output (1)

• Download

Simply returns a single port, depth 1, with nothing in it.

Created: 2014-01-24

Credits: Robert Haines Alan Williams

Empty list output and a value (1)

• Download

Simply returns a port, depth 1, with nothing in it and a port, depth 0, with a constant.

Created: 2014-01-24

Credits: Robert Haines Alan Williams

PDF Read (1)

• Download

Read a PDF from a URL

Created: 2014-01-24

Credits: Robert Haines Alan Williams

P15409 (1)

• Download

worflow to demostrate how to use Taverna with service anel or catalogue

Created: 2014-01-22

Credits: Lilly Hueber

Taverna Workflow -1 (1)

• Download

P15409

Created: 2014-01-22

Credits: Zoe Ward

Test (1)

• Download

A Simple work flow to gain experiance in using Tavern

Created: 2014-01-22

Credits: Gregory Prescott Anthony A Numan Uddin Joanne Stonehouse Cranfield Course - January 2014

simple fasta workflow (1)

• Download

workflow using services

Created: 2014-01-22

Credits: Ruth Eberhardt Aleksandra Pawlik

Simple FASTA workflow (1)

• Download

A simple Taverna workflo

Created: 2014-01-22

Credits: Aleksandra Pawlik Katy Wolstencroft Alan Williams

Test sharing 2 (1)

• Download

bla,bla

Created: 2014-01-16

Credits: quevedo79 Francisco Quevedo

BiomartAndEMBOSSAnalysis (1)

• Download

Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2014-01-14

Credits: al basyid basyid

Average solar wind speed at ACE (1)

• Download

This routine returns the average solar wind speed from ACE data given an input time interval.

Created: 2014-01-13

Credits: Eoincar

CME froward propagation (1)

• Download

Ballistic propagation of CME is the SHEBA propagation model. CME speed and speed error produces an estimated time of arrival at desired location.Constructed by David Perez Suarez.

Created: 2014-01-13

Credits: Eoincar

Produce time interval from single time (1)

• Download

Produce a time interval from a single input time.

Created: 2014-01-13

Credits: Eoincar

Produce vo table from helio catalogue (Cat... (1)

• Download

A simple query of the Helio Event Catalogue (http://msslkz.mssl.ucl.ac.uk/helio_hec/HelioTavernaService?wsdl). User can enter catalogue name, time start, time end, and an SQL condition on the query.

Created: 2014-01-13

Credits: Eoincar