Search for citations and related article in PubMed [myexperiment:pubmed_step2_link]
Created: 2009-11-17 07:02:11
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Workflow Components
Authors (2)
|
FrancoisBelleau@yahoo.ca |
| FrancoisBelleau@yahoo.ca |
Titles (2)
| Search for citations and related article in PubMed [myexperiment:pubmed_step2_link] |
| Search for citations and related article in PubMed [myexperiment:pubmed_step2_get_link] |
Descriptions (1)
| graph = http://nur77
bmuri =
http://bio2rdf.org/pubmed:18843482
http://bio2rdf.org/pubmed:18466322
http://bio2rdf.org/pubmed:17201484
http://bio2rdf.org/pubmed:14603264
http://bio2rdf.org/pubmed:12629527 |
Dependencies (0)
Inputs (4)
| Name |
Description |
| count |
|
| graph |
|
| sparql_endpoint |
|
| sparql_query |
|
Processors (4)
| Name |
Type |
Description |
| Search_Pubmed_links |
workflow |
|
| Insert_ntriples |
workflow |
|
| Insert_ntriples_1 |
workflow |
|
| SPARQL_query |
workflow |
|
Beanshells (17)
| Name |
Description |
Inputs |
Outputs |
| Build_NCBI_ELink_url |
|
pubmed_id
|
elink_url
|
| Build_citation_ntriples |
|
pubmed_id_source
pubmed_id_reference
|
ntriples
|
| Build_citation_bmuri |
|
pubmed_id
|
pubmed_bmuri
|
| Build_related_bmuri |
|
pubmed_id
|
pubmed_bmuri
|
| Build_related_ntriples |
|
pubmed_id_reference
pubmed_id_source
|
ntriples
|
| Split_bmuri |
|
bmuri
|
id
namespace
|
| Select_first_n_string |
|
stringlist
item_number
|
outputlist
|
| SPARQL_insert_ntriples |
|
ntriples
graph
sparql_host
sparql_port
|
html
|
| Concat_log_message |
|
msg
graph
sparql_url
subject
|
log
|
| Split_sparql_url |
|
sparql_url
|
host
port
|
| First_subject |
|
ntriples
|
subject
|
| SPARQL_insert_ntriples |
|
ntriples
graph
sparql_host
sparql_port
|
html
|
| Concat_log_message |
|
msg
graph
sparql_url
subject
|
log
|
| Split_sparql_url |
|
sparql_url
|
host
port
|
| First_subject |
|
ntriples
|
subject
|
| Filter_list_of_strings_extracting_match_to_a_regex |
|
stringlist
regex
group
|
filteredlist
count
|
| Build_sparql_url |
|
sparql_query
sparql_endpoint
graph
|
sparql_query_url
|
Outputs (7)
| Name |
Description |
| o1 |
|
| o2 |
|
| related_insert_log |
|
| o3 |
|
| o4 |
|
| citation_insert_log |
|
| o5 |
|
Datalinks (18)
| Source |
Sink |
| count |
Search_Pubmed_links:related_article_count |
| SPARQL_query:bmuris_string |
Search_Pubmed_links:pubmed_bmuri_string |
| sparql_endpoint |
Insert_ntriples:sparql_endpoint_url |
| graph |
Insert_ntriples:graph |
| Search_Pubmed_links:related_ntriples |
Insert_ntriples:ntriples |
| sparql_endpoint |
Insert_ntriples_1:sparql_endpoint_url |
| graph |
Insert_ntriples_1:graph |
| Search_Pubmed_links:ncbi_search_pubmed_link_citation_ntriples |
Insert_ntriples_1:ntriples |
| graph |
SPARQL_query:graph |
| sparql_endpoint |
SPARQL_query:sparql_endpoint |
| sparql_query |
SPARQL_query:sparql_query |
| Search_Pubmed_links:citation_bmuris_string |
o1 |
| Search_Pubmed_links:related_bmuris_string |
o2 |
| Insert_ntriples:sparql_insert_ntriples_log |
related_insert_log |
| Search_Pubmed_links:related_ntriples |
o3 |
| Search_Pubmed_links:ncbi_search_pubmed_link_citation_ntriples |
o4 |
| Insert_ntriples_1:sparql_insert_ntriples_log |
citation_insert_log |
| SPARQL_query:bmuris_string |
o5 |
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licensed under:
Version 1
(of 1)
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