Search for BMURI in PubMed [myexperiment:pubmed_step1_search]

Created: 2009-11-17 06:59:06

test values:

subkect

test values:

query = bio2rdf graph = http://bio2rdf

query = nur77 AND Rouillard,C graph = http://nur77

test values:

query = bio2rdf graph = http://bio2rdf

query = nur77 AND Rouillard,C graph = http://nur77

query = labrie graph = http://labrie

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/956/download?version=1
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Authors (1)

Titles (4)

Descriptions (3)

Dependencies (0)

Inputs (3)

Processors (4)

Beanshells (8)

Name	Inputs	Outputs
NCBI_search_by_namespace	term db field retstart retmax mindate maxdate rettype	outputText searchUrl searchXml
Build_search_ntriples	searchns_bmuri id namespace	bmuri ntriple
Build_search_count_ntriples	searchns_bmuri count namespace provider query	ntriples
Build_searchns_bmuri	query provider namespace	searchns_bmuri
SPARQL_insert_ntriples	ntriples graph sparql_host sparql_port	html
Concat_log_message	msg graph sparql_url subject	log
Split_sparql_url	sparql_url	host port
First_subject	ntriples	subject

Outputs (3)

Datalinks (10)

Source	Sink
query	Search_Pubmed:query
pubmed:value	Search_Pubmed:ncbi_namespace
graph	Insert_ntriples:graph
sparql_endpoint	Insert_ntriples:sparql_endpoint_url
Concatenate_two_strings:output	Insert_ntriples:ntriples
Search_Pubmed:count_ntriples	Concatenate_two_strings:string1
Search_Pubmed:search_ntriples	Concatenate_two_strings:string2
Search_Pubmed:bmuri_string	search_pubmed_bmuri_string
Concatenate_two_strings:output	o1
Insert_ntriples:sparql_insert_ntriples_log	insert_log