Genomic Filter

Created: 2009-08-19 16:19:01

This workflow filters a given Ondex graph according to a chromosomal region, or QTL region. The result is a new Ondex graph. The parameters that can be used with this service are as follows:

graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. ContextID - The Concept ID of the Context (Chromosome). From - The start position on the chromosome, e.g. 100. To - The stop position on the chromosome, e.g. 30000. Keyword - The keyword of interest, e.g. branching (Optional). Algorithm - A method to show the subnetwork of interest, e.g Neighbourhood (Optional). Default value is Neighbourhood.

Preview

Download as scalable diagram (SVG)

Run

You do not have permission to run this workflow

Workflow Components

You do not have permission to see the internals of this workflow

Information Workflow Type

Taverna 1

Information Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Paul Fisher

Information Attributions (0)

(Workflows/Files)

None

Information Tags (12)

Uploader tags

chromosome
|
filter
|
genomic
|
graph
|
loci
|
ondex
|
ovtk
|
oxl
|
qtl
|
quanitative
|
region
|
triat

Log in to add Tags

Information Shared with Groups (1)

SabrOndexProject

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1923 viewings

1 download

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

Genomic Filter

Created by Paul Fisher on Wednesday 19 August 2009 16:19:02 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (22)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Paul Fisher

All Pairs Filter (1)

This workflow filters a given Ondex graph based on the occurrence of directed edges within the graph. Only those concepts that have directional edges are returned to the user, in the form of a new graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. GdsWeight - The name of the GDS type to ...

Created: 2009-08-19

Credits: Paul Fisher

Taverna 1

Uploader

Paul Fisher

Clean GO Filter (1)

This workflow filters an Ondex graph, by cleaning up any GO terms within the Graph (?). The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph.

Created: 2009-08-19

Credits: Paul Fisher