Tab Parser

This workflow takes in a tab separated file, and then parses specific rows and columns from the file into an Ondex Graph. Additional prarameters are provided, though these are optional:

graphId Long the ID of the Graph (REQUIRED) input String the plugin input (REQUIRED) skip Integer How many rows to skip at begin of document (Optional). Default value is 22. fromCol Integer Index of concept parser id for from concept. Default value is 0. (REQUIRED) toCol Integer Index of concept parser id for to concept. Default value is 1. (REQUIRED) fromNameCol - ConceptName index for use with from concept. (Optional) toNameCol - ConceptName index for use with to concept. (Optional) fromPhenoCol - GDS Pheno index for use with from concept. (Optional) toPhenoCol - GDS Pheno index for use with to concept. (Optional) confCol - Index of confidence score of relation. (Optional) TaxId - Which taxonomy id should be assigned to the sequences. (Optional) CC - The type of the concepts (e.g. target, gene, protein) (Optional). Default value is Thing. CV - The source of the concepts (e.g. TAIR, KEGG, unknown) (Optional). Default value is unknown. RelationType - The relation type to create for every line in the tabular file (Optional) Threshold - Import threshold for confidence value (Optional) fromTaxId - TaxID index for use with from concept. (Optional) toTaxId - TaxID index for use with to concept (Optional)