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G-language Genome Analysis Environment - Basic sequence manipulations

Created: 2010-04-05 06:13:16      Last updated: 2010-04-05 06:13:17

This workflow shows simple sequence manipulation functions of G-language GAE, such as random shuffling, obtaining a reverse complement, and translation of nucleotide sequences, and showing basic composition statistics for nucleotide and amino acid sequences. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

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Taverna 2

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1619?size=60x60 Jp cory (Kazuki Oshita)

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Version History

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  1. G-language Genome Analysis Environment - Basic sequence manipulations

    Created by cory (Kazuki Oshita) on Saturday 27 June 2009 09:16:23 (UTC)

    Last edited by cory (Kazuki Oshita) on Wednesday 06 February 2013 16:23:51 (UTC)

  2. G-language Genome Analysis Environment - Basic sequence manipulations

    Created by cory (Kazuki Oshita) on Monday 05 April 2010 06:13:16 (UTC)

    Revision comment:

    Corresponding to a new version of G-language SOAP service.



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Workflow Other workflows that use similar services (10)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Taverna 2
Uploader
1619?size=60x60 Jp cory (Kazuki Oshita)

Workflow G-language Genome Analysis Environment - B... (2)

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Given an identifier for genome sequence (by default, genome of Mycoplasma genitalium: refseq:NC_000908) or raw sequence data in FASTA format, this workflow calculates and graphs the following properties using the G-language Genome Analysis Environment: GC skew (gcskew), cumulative GC skew (gcskew_cumulative), GC skew of coding/intergenic/GC3 (genomicskew), GC content with sliding windows (gcwin), replication origin and terminus (find_ori_ter), codon usage table (codon_usage), the Codon Adapta...

Created: 2010-04-05 | Last updated: 2010-04-05

Credits: User cory (Kazuki Oshita)

Taverna 2
Uploader
1619?size=60x60 Jp cory (Kazuki Oshita)

Workflow G-language Genome Analysis Environment - B... (2)

Thumb
Given a numerical vector (array), this workflow calculates the maximum value (max) and its index (maxdex), minumum value (min) and its index (mindex), mean, sum, median, and standard deviation. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Created: 2010-04-05

Credits: User cory (Kazuki Oshita)

Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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