getSynonymsFromSBML

Created: 2009-06-09 20:02:05 Last updated: 2009-06-09 20:08:02

Download Workflow

This service takes an SBML file (for example from the Biomodels database) and extracts synonyms for each of the SBML species in the file, using ChEBI. Service is written and maintained by Neil Swainston at the MCISB.

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/789/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (1)

Name	Description
SBML-file

Processors (1)

Name	Type	Description
getSynonyms	arbitrarywsdl

Beanshells (0)

Outputs (1)

Name	Description
Synonyms

Links (2)

Source	Sink
SBML-file	getSynonyms:in
getSynonyms:return	Synonyms

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Duncan Hull

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Duncan Hull

Information Attributions (0)

(Workflows/Files)

None

Information Tags (8)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (1)

useful_for_sysmo

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1980 viewings

1778 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

getSynonymsFromSBML

Created by Duncan Hull on Tuesday 09 June 2009 20:02:05 (UTC)

Last edited by Duncan Hull on Tuesday 09 June 2009 20:08:02 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (1)

Taverna 1

Uploader

Duncan Hull

getOntologyTerm (1)

Download

This service takes a MIRIAM compliant URI and looks up all the synonyms for that URI using ChEBI and other services. Service developed and maintained by Neil Swainston at the MCISB in Manchester.

Created: 2009-06-09 | Last updated: 2009-06-09

Credits: Duncan Hull