getSynonymsFromSBML

Created: 2009-06-09 20:02:05 Last updated: 2009-06-09 20:08:02

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This service takes an SBML file (for example from the Biomodels database) and extracts synonyms for each of the SBML species in the file, using ChEBI. Service is written and maintained by Neil Swainston at the MCISB.

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Workflow Components

Inputs (1)

Name	Description
SBML-file

Processors (1)

Name	Type	Description
getSynonyms	arbitrarywsdl

Beanshells (0)

Outputs (1)

Name	Description
Synonyms

Links (2)

Source	Sink
SBML-file	getSynonyms:in
getSynonyms:return	Synonyms

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Information Workflow Type

Taverna 1

Information Uploader

Duncan Hull

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Information Version 1 (of 1)

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Duncan Hull

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Information Statistics

1980 viewings

1778 downloads

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getSynonymsFromSBML

Created by Duncan Hull on Tuesday 09 June 2009 20:02:05 (UTC)

Last edited by Duncan Hull on Tuesday 09 June 2009 20:08:02 (UTC)

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Other workflows that use similar services (1)

Taverna 1

Uploader

Duncan Hull

getOntologyTerm (1)

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This service takes a MIRIAM compliant URI and looks up all the synonyms for that URI using ChEBI and other services. Service developed and maintained by Neil Swainston at the MCISB in Manchester.

Created: 2009-06-09 | Last updated: 2009-06-09

Credits: Duncan Hull