Search InChI in NCBI eSearch (pccompound)

Created: 2009-03-30 09:26:25 Last updated: 2009-03-30 09:47:00

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This workflow takes in a search term (e.g. InChI) for search in PubChem pccompound database. The result is an xml file containing summary information about the search term and also a compound image and the compound webpage fetched from Pubchem.

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Workflow Components

Inputs (1)

Name	Description
terms

Processors (8)

Name	Type	Description
NCBI_eSearch	arbitrarywsdl
fetch_compound_info	local
fetch_compound_image	local
Beanshell_scripting_host	beanshell
parametersXML	local
run_eSummary	arbitrarywsdl
requestXML	local
NCBI_database	stringconstant

Beanshells (1)

Name	Description	Inputs	Outputs
Beanshell_scripting_host		xml db_search	image info db id

Outputs (3)

Name	Description
webpage
image
out

Links (13)

Source	Sink
Beanshell_scripting_host:id	requestXML:id
Beanshell_scripting_host:image	fetch_compound_image:url
Beanshell_scripting_host:info	fetch_compound_info:url
NCBI_database:value	Beanshell_scripting_host:db_search
NCBI_database:value	parametersXML:db
fetch_compound_image:image	image
fetch_compound_info:contents	webpage
parametersXML:output	NCBI_eSearch:parameters
terms	parametersXML:term
Beanshell_scripting_host:db	requestXML:db
NCBI_eSearch:parameters	Beanshell_scripting_host:xml
requestXML:output	run_eSummary:request
run_eSummary:result	out

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Information Workflow Type

Taverna 1

Information Uploader

Michael Gerlich

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Michael Gerlich

Information Attributions (0)

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None

Information Tags (12)

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Information Statistics

2661 viewings

2210 downloads

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Citations (0)

None

Version History

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Search InChI in NCBI eSearch (pccompound)

Created by Michael Gerlich on Monday 30 March 2009 09:26:25 (UTC)

Last edited by Michael Gerlich on Monday 30 March 2009 09:47:01 (UTC)

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