Phylogeny Bootstrapped Algorithm

Created: 2010-01-13 18:47:06 Last updated: 2010-11-17 13:57:19

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Bootstrapped sequences algorithm description at http://pro.genomics.purdue.edu/cgi-bin/emboss/help/fseqboot. Queries NCBI Core for specific records (e.g. Definition=19 AND Definition=cadherin AND Definition=gallus)., then runs NCBI BLASTN to retrieve similar sequences. Runs xmknr (Vmatch) to remove duplicate records. Runs SEQBOOT, then run DNADIST using the output of SEQBOOT as its input, then runs NEIGHBOR using the output of DNADIST as its input, and then run CONSENSE using the tree file from NEIGHBOR as its input

© Copyright 1991-2008 by the University of Washington. Written by Joseph Felsenstein. Permission is granted to copy this document provided that no fee is charged for it and that this copyright notice is not removed.

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Carol Lushbough

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Phylogeny Bootstrap Analysis

Created by Carol Lushbough on Tuesday 10 February 2009 16:43:44 (UTC)

Last edited by Carol Lushbough on Friday 28 August 2009 18:26:06 (UTC)
Phylogeny Bootstrapped Algorithm

Created by Carol Lushbough on Wednesday 13 January 2010 18:47:06 (UTC)

Last edited by Carol Lushbough on Wednesday 17 November 2010 13:57:19 (UTC)

Revision comment:

Functionality was added to allow this workflow to be executed from within myExperiment.

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