feat FSL group analysis

Created: 2009-01-28 17:25:34      Last updated: 2009-01-28 17:36:07

This workflow is to be run on results obtained from this one (couldn't manage to find a clean solution for merging those two in Scufl).

Processor "feat_group":

1. builds the experiment intput (design) file from template and input parameters

2. calls feat FSL

Processor "roi" reads activation maps produced by feat_group, extract a region of interest and compute the mean, stdev, max and min activation within it.

Here is a sample input in VBrowser's XML dialect.

Below is detailed the meaning of input parameters.


<h1>Files to be swept on (thus iterated with a cross pdct)</h1>

* designFile_template: template for input design file.

* region_of_interest: binary mask of the ROI in .nii.gz format

<h1>Analysis-related files (to be combined with a dot)</h1>

* feat_files{1-11}: output of feat individual analysis for patient 1 to 11. Archive in tgz format.




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