This workflow uses one or more services that
are deprecated as of 31st December 2012
(almost 12 years ago), and may no longer function.
Show details...
Affected service WSDL:
- http://soap.genome.jp/KEGG.wsdl
Details:
KEGG will be moving from a WSDL/SOAP interface to REST. Details of the new REST services can be found here.
Working examples that use the new REST service can be viewed here, here and here.
BioMart_hsapiens_gene_ensembl_variation_Noom_Edit_09_12_2551
Created: 2008-12-17 09:08:50
Last updated: 2008-12-26 07:51:00
No description has been set
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Workflow Components
Inputs (1)
| Name |
Description |
| rsID |
rs1043502
rs10799658 |
Processors (14)
| Name |
Type |
Description |
| REG_Split_by_C |
stringconstant |
|
| REG_Merge_by_C |
stringconstant |
|
| Flatten_Entrez_ID |
local |
|
| Flatten_list |
local |
|
| Split_EnsemblID |
local |
|
| Remove_dup_ID |
local |
|
| Flatten_Ensembl_report |
local |
|
| Merge_EnsemblID |
local |
|
| Nested_GO_Update |
workflow |
|
| Nested_hsapiens_snp |
workflow |
|
| Nested_EnsemblGeneInformation |
workflow |
|
| Nested_Pathway |
workflow |
|
| Nested_OMIM |
workflow |
Input as the entrez gene ID from NCBI and the out put is the OMIM ID and the OMIM description |
| Nested_Motif |
workflow |
|
Beanshells (11)
| Name |
Description |
Inputs |
Outputs |
| Make_GO_Report |
|
Bio_ID
Bio_Type
Ensembl_ID
|
report
|
| Merge_infomation |
|
snpID
chr_name
ensemblID
chrom_start
allele
chrom_stand
ensembl_type
validated
peptide_shift
|
hsapien
|
| Make_hsapiens_report |
|
geneEnsembl_id
gene_des
gene_chr
gene_start
gene_stop
gene_stand
gene_name
entrezGeneID
band
|
ensemblInfo
|
| concat_id_with_URL |
|
id
|
url
|
| Lister |
|
word
|
output
|
| trim_replace |
|
in
|
out
|
| prepare_id_result |
|
id
result
|
id_result
|
| substring |
|
in
|
out
|
| remove_null |
|
in
|
out
|
| Beanshell_scripting_host |
|
entrezid
omimid
|
out
|
| Create_Motif_Information |
|
motif_id
definition
genes_id
start_position
end_position
score
|
motif_info
|
Outputs (10)
| Name |
Description |
| Gene_Information |
|
| SNP_Information |
|
| Unique_Ensembl_ID |
|
| Unique_Entrez_ID |
|
| Pathway_Image |
|
| Pathways |
|
| Pathways_Description |
|
| GO_Information_Update |
|
| OMIM_Phenotype |
|
| Mofit_Information |
|
Links (24)
| Source |
Sink |
| Flatten_Entrez_ID:outputlist |
Nested_Motif:Entrez_GeneID |
| Flatten_Entrez_ID:outputlist |
Nested_Pathway:Gene_Id |
| Flatten_list:outputlist |
Merge_EnsemblID:stringlist |
| Merge_EnsemblID:concatenated |
Split_EnsemblID:string |
| Nested_EnsemblGeneInformation:EnsemblGene_Information |
Flatten_Ensembl_report:inputlist |
| Nested_EnsemblGeneInformation:Unique_EntrezID |
Nested_OMIM:entrezID |
| Nested_Motif:Motif_Information |
Mofit_Information |
| Nested_Pathway:Pathway_Image |
Pathway_Image |
| Nested_Pathway:Pathways |
Pathways |
| Nested_hsapiens_snp:SNP_Information |
SNP_Information |
| Nested_hsapiens_snp:ensemblID |
Flatten_list:inputlist |
| REG_Merge_by_C:value |
Merge_EnsemblID:seperator |
| REG_Split_by_C:value |
Split_EnsemblID:regex |
| Remove_dup_ID:strippedlist |
Nested_EnsemblGeneInformation:ensembleID |
| rsID |
Nested_hsapiens_snp:rsID_in |
| Remove_dup_ID:strippedlist |
Nested_GO_Update:ensemblID |
| Flatten_Ensembl_report:outputlist |
Gene_Information |
| Flatten_Entrez_ID:outputlist |
Unique_Entrez_ID |
| Nested_EnsemblGeneInformation:Unique_EntrezID |
Flatten_Entrez_ID:inputlist |
| Remove_dup_ID:strippedlist |
Unique_Ensembl_ID |
| Split_EnsemblID:split |
Remove_dup_ID:stringlist |
| Nested_GO_Update:GO_Information |
GO_Information_Update |
| Nested_OMIM:OMIM_Phenotype |
OMIM_Phenotype |
| Nested_Pathway:ID_with_PathwayDescriptions |
Pathways_Description |
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License
All versions of this Workflow are
licensed under:
Version 1
(of 1)
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