Multi sequences NCBI BLAST

Created: 2008-12-05 02:57:21

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Run a BLAST analysis using the EBI's WSNCBIBlast service (see http://www.ebi.ac.uk/Tools/webservices/services/ncbiblast). This workflow wraps the EBI_NCBI_BLAST workflow to provide a basic user interface which prompts for the required inputs: sequence file, database, BLAST program and user e-mail. Other parameters (e.g. matrix, sort, gap penalties, etc.) are allowed to default.

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http://www.myexperiment.org/workflows/593/download?version=1
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Workflow Components

Inputs (1)

Name	Description
Sequence_file	Select sequence file of fasta format

Processors (6)

Name	Type	Description
EBI_ncbiblast	workflow
Ask_for_email_address	local	Input your E-mail address
Search_database_list	local	List of database names for select.
Select_database	local	choose database
Blast_program_list	local	List of blast program names for select.
Select_blast_program	local	choose blast program

Beanshells (0)

Outputs (2)

Name	Description
Hit_id_list
Blast_result	text format result

Links (8)

Source	Sink
Ask_for_email_address:answer	EBI_ncbiblast:Email
Blast_program_list:split	Select_blast_program:valueList
EBI_ncbiblast:Hit_id_list	Hit_id_list
EBI_ncbiblast:Text_result	Blast_result
Search_database_list:split	Select_database:valueList
Select_blast_program:answer	EBI_ncbiblast:BLAST_program
Select_database:answer	EBI_ncbiblast:Search_database
Sequence_file	EBI_ncbiblast:Sequence